8BER image
Deposition Date 2022-10-21
Release Date 2022-12-28
Last Version Date 2024-11-13
Entry Detail
PDB ID:
8BER
Title:
Hepatitis B virus core antigen (HBc) with the insertion of four external domains of the influenza A M2 protein (HBc/4M2e) with T=3 topology
Biological Source:
Method Details:
Experimental Method:
Resolution:
4.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Core protein,Matrix protein 2,External core antigen
Gene (Uniprot):M, C, prec/C
Chain IDs:A, B, C
Chain Length:290
Number of Molecules:3
Biological Source:Hepatitis B virus, Influenza A virus (strain A/Malaysia:Malaya/302/1954 H1N1)
Ligand Molecules
Primary Citation
Inside and outside of virus-like particles HBc and HBc/4M2e: A comprehensive study of the structure.
Biophys.Chem. 293 106943 106943 (2022)
PMID: 36495688 DOI: 10.1016/j.bpc.2022.106943

Abstact

Hepatitis B virus core antigen (HBc) with the insertion of four external domains of the influenza A M2 protein (HBc/4M2e) form virus-like particles whose structure was studied using a combination of molecular modeling and cryo-electron microscopy (cryo-EM). It was also shown that self-assembling of the particles occurs inside bacterial cells, but despite the big inner volume of the core shell particle, purified HBc/4M2e contain an insignificant amount of bacterial proteins. It was shown that a fragment of the M2e corresponding to 4M2e insertion is prone to formation of amyloid-like fibrils. However, as the part of the immunodominant loop, M2e insertion does not show a tendency to intermolecular interaction. A full-atomic HBc-4M2e model with the resolution of about 3 Å (3.13 Å for particles of Т = 4 symmetry, 3.7 Å for particles of Т = 3 symmetry) was obtained by molecular modeling methods based on cryo-EM data.

Legend

Protein

Chemical

Disease

Primary Citation of related structures