8BDB image
Entry Detail
PDB ID:
8BDB
Keywords:
Title:
Ribulose-1,5-bisphosphate carboxylase/oxygenase from Griffithsia monilis
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-10-19
Release Date:
2023-06-14
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ribulose bisphosphate carboxylase large chain
Chain IDs:A, C, G, K, O
Chain Length:480
Number of Molecules:5
Biological Source:Griffithsia monilis
Polymer Type:polypeptide(L)
Description:Ribulose bisphosphate carboxylase small chain
Chain IDs:B, D, F, H, J, L, N, P
Chain Length:138
Number of Molecules:8
Biological Source:Griffithsia monilis
Polymer Type:polypeptide(L)
Description:Ribulose bisphosphate carboxylase large chain
Chain IDs:E, I, M
Chain Length:480
Number of Molecules:3
Biological Source:Griffithsia monilis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CCS A CYS modified residue
HL2 A LEU modified residue
KCX A LYS modified residue
Primary Citation
Grafting Rhodobacter sphaeroides with red algae Rubisco to accelerate catalysis and plant growth.
Nat.Plants 9 978 986 (2023)
PMID: 37291398 DOI: 10.1038/s41477-023-01436-7

Abstact

Improving the carboxylation properties of Rubisco has primarily arisen from unforeseen amino acid substitutions remote from the catalytic site. The unpredictability has frustrated rational design efforts to enhance plant Rubisco towards the prized growth-enhancing carboxylation properties of red algae Griffithsia monilis GmRubisco. To address this, we determined the crystal structure of GmRubisco to 1.7 Å. Three structurally divergent domains were identified relative to the red-type bacterial Rhodobacter sphaeroides RsRubisco that, unlike GmRubisco, are expressed in Escherichia coli and plants. Kinetic comparison of 11 RsRubisco chimaeras revealed that incorporating C329A and A332V substitutions from GmRubisco Loop 6 (corresponding to plant residues 328 and 331) into RsRubisco increased the carboxylation rate (kcatc) by 60%, the carboxylation efficiency in air by 22% and the CO2/O2 specificity (Sc/o) by 7%. Plastome transformation of this RsRubisco Loop 6 mutant into tobacco enhanced photosynthesis and growth up to twofold over tobacco producing wild-type RsRubisco. Our findings demonstrate the utility of RsRubisco for the identification and in planta testing of amino acid grafts from algal Rubisco that can enhance the enzyme's carboxylase potential.

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Primary Citation of related structures