8BBT image
Deposition Date 2022-10-14
Release Date 2023-07-12
Last Version Date 2024-11-20
Entry Detail
PDB ID:
8BBT
Keywords:
Title:
Native Tipula oleracea Nudivirus polyhedrin - 1960
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.69 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:MOBP
Gene (Uniprot):mOBp
Chain IDs:A
Chain Length:241
Number of Molecules:1
Biological Source:Tipula oleracea nudivirus
Ligand Molecules
Primary Citation
Atomic structure of a nudivirus occlusion body protein determined from a 70-year-old crystal sample.
Nat Commun 14 4160 4160 (2023)
PMID: 37443157 DOI: 10.1038/s41467-023-39819-1

Abstact

Infectious protein crystals are an essential part of the viral lifecycle for double-stranded DNA Baculoviridae and double-stranded RNA cypoviruses. These viral protein crystals, termed occlusion bodies or polyhedra, are dense protein assemblies that form a crystalline array, encasing newly formed virions. Here, using X-ray crystallography we determine the structure of a polyhedrin from Nudiviridae. This double-stranded DNA virus family is a sister-group to the baculoviruses, whose members were thought to lack occlusion bodies. The 70-year-old sample contains a well-ordered lattice formed by a predominantly α-helical building block that assembles into a dense, highly interconnected protein crystal. The lattice is maintained by extensive hydrophobic and electrostatic interactions, disulfide bonds, and domain switching. The resulting lattice is resistant to most environmental stresses. Comparison of this structure to baculovirus or cypovirus polyhedra shows a distinct protein structure, crystal space group, and unit cell dimensions, however, all polyhedra utilise common principles of occlusion body assembly.

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Primary Citation of related structures