8BAU image
Entry Detail
PDB ID:
8BAU
Keywords:
Title:
Phytophthora nicotianae var. parasitica NADAR in complex with ADP-ribose
Biological Source:
PDB Version:
Deposition Date:
2022-10-11
Release Date:
2023-07-12
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.22
R-Value Work:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:NADAR domain-containing protein
Chain IDs:A
Chain Length:189
Number of Molecules:1
Biological Source:Phytophthora nicotianae var. parasitica
Primary Citation
Molecular basis for the reversible ADP-ribosylation of guanosine bases.
Mol.Cell 83 2303 ? (2023)
PMID: 37390817 DOI: 10.1016/j.molcel.2023.06.013

Abstact

Modification of nucleic acids by ADP-ribosylation is catalyzed by various ADP-ribosyltransferases, including the DarT enzyme. The latter is part of the bacterial toxin-antitoxin (TA) system DarTG, which was shown to provide control of DNA replication and bacterial growth as well as protection against bacteriophages. Two subfamilies have been identified, DarTG1 and DarTG2, which are distinguished by their associated antitoxins. While DarTG2 catalyzes reversible ADP-ribosylation of thymidine bases employing a macrodomain as antitoxin, the DNA ADP-ribosylation activity of DarTG1 and the biochemical function of its antitoxin, a NADAR domain, are as yet unknown. Using structural and biochemical approaches, we show that DarT1-NADAR is a TA system for reversible ADP-ribosylation of guanosine bases. DarT1 evolved the ability to link ADP-ribose to the guanine amino group, which is specifically hydrolyzed by NADAR. We show that guanine de-ADP-ribosylation is also conserved among eukaryotic and non-DarT-associated NADAR members, indicating a wide distribution of reversible guanine modifications beyond DarTG systems.

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