8BAC image
Deposition Date 2022-10-11
Release Date 2023-03-01
Last Version Date 2024-10-16
Entry Detail
PDB ID:
8BAC
Keywords:
Title:
Crystal structure of human heparanase in complex with competitive inhibitor GD05
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.05 Å
R-Value Free:
0.26
R-Value Work:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Heparanase 50 kDa subunit
Gene (Uniprot):HPSE
Chain IDs:A (auth: AAA)
Chain Length:389
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Heparanase 8 kDa subunit
Gene (Uniprot):HPSE
Chain IDs:B (auth: BBB)
Chain Length:74
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Synthesis of Uronic Acid 1-Azasugars as Putative Inhibitors of alpha-Iduronidase, beta-Glucuronidase and Heparanase.
Chembiochem 24 e202200619 e202200619 (2023)
PMID: 36453606 DOI: 10.1002/cbic.202200619

Abstact

1-Azasugar analogues of l-iduronic acid (l-IdoA) and d-glucuronic acid (d-GlcA) and their corresponding enantiomers have been synthesized as potential pharmacological chaperones for mucopolysaccharidosis I (MPS I), a lysosomal storage disease caused by mutations in the gene encoding α-iduronidase (IDUA). The compounds were efficiently synthesized in nine or ten steps from d- or l-arabinose, and the structures were confirmed by X-ray crystallographic analysis of key intermediates. All compounds were inactive against IDUA, although l-IdoA-configured 8 moderately inhibited β-glucuronidase (β-GLU). The d-GlcA-configured 9 was a potent inhibitor of β-GLU and a moderate inhibitor of the endo-β-glucuronidase heparanase. Co-crystallization of 9 with heparanase revealed that the endocyclic nitrogen of 9 forms close interactions with both the catalytic acid and catalytic nucleophile.

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Primary Citation of related structures
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