8B8V image
Deposition Date 2022-10-05
Release Date 2023-03-15
Last Version Date 2024-02-07
Entry Detail
PDB ID:
8B8V
Keywords:
Title:
Crystal structure of the Rabies virus RNA free nucleoprotein- phosphoprotein complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nucleoprotein
Chain IDs:A
Chain Length:427
Number of Molecules:1
Biological Source:Lyssavirus rabies
Polymer Type:polypeptide(L)
Molecule:Phosphoprotein
Chain IDs:B
Chain Length:76
Number of Molecules:1
Biological Source:Lyssavirus rabies
Ligand Molecules
Primary Citation
Structure and Dynamics of the Unassembled Nucleoprotein of Rabies Virus in Complex with Its Phosphoprotein Chaperone Module.
Viruses 14 ? ? (2022)
PMID: 36560817 DOI: 10.3390/v14122813

Abstact

As for all non-segmented negative RNA viruses, rabies virus has its genome packaged in a linear assembly of nucleoprotein (N), named nucleocapsid. The formation of new nucleocapsids during virus replication in cells requires the production of soluble N protein in complex with its phosphoprotein (P) chaperone. In this study, we reconstituted a soluble heterodimeric complex between an armless N protein of rabies virus (RABV), lacking its N-terminal subdomain (NNT-ARM), and a peptide encompassing the N0 chaperon module of the P protein. We showed that the chaperone module undergoes a disordered-order transition when it assembles with N0 and measured an affinity in the low nanomolar range using a competition assay. We solved the crystal structure of the complex at a resolution of 2.3 Å, unveiling the details of the conserved interfaces. MD simulations showed that both the chaperon module of P and RNA-mediated polymerization reduced the ability of the RNA binding cavity to open and close. Finally, by reconstituting a complex with full-length P protein, we demonstrated that each P dimer could independently chaperon two N0 molecules.

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