8B8F image
Deposition Date 2022-10-04
Release Date 2023-02-22
Last Version Date 2024-02-07
Entry Detail
PDB ID:
8B8F
Title:
Atomic structure of the beta-trefoil domain of the Laccaria bicolor lectin LBL in complex with lactose
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.00 Å
R-Value Free:
0.15
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:N-terminal beta-trefoil domain of the lectin LBL from Laccaria bicolor
Gene (Uniprot):LACBIDRAFT_318163
Chain IDs:A
Chain Length:152
Number of Molecules:1
Biological Source:Laccaria bicolor S238N-H53
Peptide-like Molecules
PRD_900004
PRD_900008
Primary Citation
Atomic crystal structure and sugar specificity of a beta-trefoil lectin domain from the ectomycorrhizal basidiomycete Laccaria bicolor.
Int.J.Biol.Macromol. 233 123507 123507 (2023)
PMID: 36754262 DOI: 10.1016/j.ijbiomac.2023.123507

Abstact

Lectins from fruiting bodies are a diverse group of sugar-binding proteins from mushrooms that face the biologically relevant challenge of discriminating self- from non-self carbohydrate structures, therefore providing a basis for an innate defence system. Such a system entails both detection and destruction of invaders and/or feeders, and in contrast to more complex organisms with immense immune systems, these two functions normally rely on multitasking lectins, namely, lectins with different functional modules. Here, we present a novel fungal lectin, LBL, from the basidiomycete Laccaria bicolor. Using a diverse set of biophysical techniques, we unveil the fine details of the sugar-binding specificity of the N-terminal β-trefoil of LBL (LBL152), whose structure has been determined at the highest resolution so far reported for such a fold. LBL152 binds complex poly-N-Acetyllactosamine polysaccharides and also robust LBL152 binding to Caenorhabditis elegans and Drosophila melanogaster cellular extracts was detected in microarray assays, with a seeming preference for the fruit fly adult and pupa stages over the larva stage. Prediction of the structure of the C-terminal part of LBL with AlphaFold reveals a tandem repeat of two structurally almost identical domains of around 110 amino acids each, despite sharing low sequence conservation.

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