ISDA

Deposition Date 2022-09-29

Release Date 2023-08-23

Last Version Date 2023-08-23

Entry Detail

PDB ID:

8B7C

Keywords:

CELL CYCLE

Title:

Tubulin-maytansinoid-12 complex

Biological Source:

Source Organism:

Rattus norvegicus (Taxon ID: 10116)
Gallus gallus (Taxon ID: 9031)
Bos taurus (Taxon ID: 9913)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.90 Å

R-Value Free:

0.21

R-Value Work:

0.18

R-Value Observed:

0.18

Space Group:

P 21 21 21

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Tubulin alpha-1B chain
Chain IDs:A, C
Chain Length:451
Number of Molecules:2
Biological Source:Bos taurus

UniProt ID:P81947 Pfam ID:PF00091, PF03953

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Tubulin beta-2B chain
Gene (Uniprot):TUBB2B
Chain IDs:B, D
Chain Length:445
Number of Molecules:2
Biological Source:Bos taurus

UniProt ID:Q6B856 Pfam ID:PF00091, PF03953

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Stathmin-4
Gene (Uniprot):Stmn4
Chain IDs:E
Chain Length:143
Number of Molecules:1
Biological Source:Rattus norvegicus

UniProt ID:P63043 Pfam ID:PF00836

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Tubulin tyrosine ligase
Gene (Uniprot):TTL
Chain IDs:F
Chain Length:384
Number of Molecules:1
Biological Source:Gallus gallus

UniProt ID:A0A8V0Z8P0 Pfam ID:PF03133

Ligand Molecules

ACP

GDP

GTP

IMD

MES

PWC

Primary Citation

Maytansinol Functionalization: Towards Useful Probes for Studying Microtubule Dynamics.

Boiarska, Z, Perez-Pena, H, Abel, A.C, Marzullo, P, Alvarez-Bernad, B, Bonato, F, Santini, B, Horvath, D, Lucena-Agell, D, Vasile, F, Sironi, M, Diaz, J.F, Prota, A.E, Pieraccini, S, Passarella, D.Show

Chemistry 29 e202203431 e202203431 (2023)

PMID: 36468686 DOI: 10.1002/chem.202203431

Abstact

Maytansinoids are a successful class of natural and semisynthetic tubulin binders, known for their potent cytotoxic activity. Their wider application as cytotoxins and chemical probes to study tubulin dynamics has been held back by the complexity of natural product chemistry. Here we report the synthesis of long-chain derivatives and maytansinoid conjugates. We confirmed that bulky substituents do not impact their high activity or the scaffold's binding mode. These encouraging results open new avenues for the design of new maytansine-based probes.

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Protein

Chemical

Disease

Primary Citation of related structures