8B6N image
Deposition Date 2022-09-27
Release Date 2023-10-11
Last Version Date 2024-03-06
Entry Detail
PDB ID:
8B6N
Keywords:
Title:
X-ray structure of the haloalkane dehalogenase HaloTag7 circular permutated at positions 141-156 (cpHaloTagDelta)
Biological Source:
Source Organism:
Rhodococcus sp. (Taxon ID: 1831)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Haloalkane dehalogenase
Gene (Uniprot):dhaA
Chain IDs:A
Chain Length:294
Number of Molecules:1
Biological Source:Rhodococcus sp.
Ligand Molecules
Primary Citation
Recording physiological history of cells with chemical labeling.
Science 383 890 897 (2024)
PMID: 38386755 DOI: 10.1126/science.adg0812

Abstact

Recordings of the physiological history of cells provide insights into biological processes, yet obtaining such recordings is a challenge. To address this, we introduce a method to record transient cellular events for later analysis. We designed proteins that become labeled in the presence of both a specific cellular activity and a fluorescent substrate. The recording period is set by the presence of the substrate, whereas the cellular activity controls the degree of the labeling. The use of distinguishable substrates enabled the recording of successive periods of activity. We recorded protein-protein interactions, G protein-coupled receptor activation, and increases in intracellular calcium. Recordings of elevated calcium levels allowed selections of cells from heterogeneous populations for transcriptomic analysis and tracking of neuronal activities in flies and zebrafish.

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Primary Citation of related structures