8B6G image
Deposition Date 2022-09-27
Release Date 2023-03-29
Last Version Date 2024-11-20
Entry Detail
PDB ID:
8B6G
Title:
Cryo-EM structure of succinate dehydrogenase complex (complex-II) in respiratory supercomplex of Tetrahymena thermophila
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial
Gene (Uniprot):TTHERM_00047080
Chain IDs:D (auth: CA)
Chain Length:636
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Succinate dehydrogenase (quinone)
Gene (Uniprot):TTHERM_00241700
Chain IDs:F (auth: CB)
Chain Length:312
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b-c1 complex subunit 8
Gene (Uniprot):TTHERM_00387120
Chain IDs:M (auth: CC)
Chain Length:60
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:SDHD
Chain IDs:O (auth: CD)
Chain Length:44
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NmrA domain-containing protein
Gene (Uniprot):TTHERM_00571650
Chain IDs:J (auth: CE)
Chain Length:322
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transmembrane protein, putative
Gene (Uniprot):TTHERM_00532090
Chain IDs:G (auth: CF)
Chain Length:296
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SDHTT3
Gene (Uniprot):TTHERM_00283850
Chain IDs:H (auth: CG)
Chain Length:198
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Diphthamide synthesis protein
Gene (Uniprot):TTHERM_00658950
Chain IDs:A (auth: CH)
Chain Length:195
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DUF4885 domain-containing protein
Gene (Uniprot):TTHERM_00601860
Chain IDs:E (auth: CI)
Chain Length:114
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transmembrane protein, putative
Gene (Uniprot):TTHERM_00626980
Chain IDs:K (auth: CJ)
Chain Length:103
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transmembrane protein, putative
Gene (Uniprot):TTHERM_00713350
Chain IDs:I (auth: CK)
Chain Length:93
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transposase
Gene (Uniprot):TTHERM_000287919
Chain IDs:C (auth: CL)
Chain Length:89
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transmembrane protein, putative
Gene (Uniprot):TTHERM_00637670
Chain IDs:B (auth: CM)
Chain Length:76
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transmembrane protein, putative
Gene (Uniprot):TTHERM_001034353
Chain IDs:L (auth: CN)
Chain Length:62
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Polymer Type:polypeptide(L)
Molecule:SDHTT11
Chain IDs:N (auth: CO)
Chain Length:43
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Primary Citation
Structural basis of mitochondrial membrane bending by the I-II-III 2 -IV 2 supercomplex.
Nature 615 934 938 (2023)
PMID: 36949187 DOI: 10.1038/s41586-023-05817-y

Abstact

Mitochondrial energy conversion requires an intricate architecture of the inner mitochondrial membrane1. Here we show that a supercomplex containing all four respiratory chain components contributes to membrane curvature induction in ciliates. We report cryo-electron microscopy and cryo-tomography structures of the supercomplex that comprises 150 different proteins and 311 bound lipids, forming a stable 5.8-MDa assembly. Owing to subunit acquisition and extension, complex I associates with a complex IV dimer, generating a wedge-shaped gap that serves as a binding site for complex II. Together with a tilted complex III dimer association, it results in a curved membrane region. Using molecular dynamics simulations, we demonstrate that the divergent supercomplex actively contributes to the membrane curvature induction and tubulation of cristae. Our findings highlight how the evolution of protein subunits of respiratory complexes has led to the I-II-III2-IV2 supercomplex that contributes to the shaping of the bioenergetic membrane, thereby enabling its functional specialization.

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