8B3P image
Entry Detail
PDB ID:
8B3P
EMDB ID:
Keywords:
Title:
CryoEM structure of the round tip (proteins pVII/pVIII/pIX) from the f1 filamentous bacteriophage
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-09-16
Release Date:
2023-05-24
Method Details:
Experimental Method:
Resolution:
2.81 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tail virion protein G7P
Chain IDs:A (auth: AAA), L (auth: BBB), W (auth: CCC), HA (auth: DDD), SA (auth: EEE)
Chain Length:33
Number of Molecules:5
Biological Source:Enterobacteria phage f1
Polymer Type:polypeptide(L)
Description:Tail virion protein G9P
Chain IDs:B (auth: FFF), M (auth: GGG), X (auth: HHH), IA (auth: III), TA (auth: JJJ)
Chain Length:32
Number of Molecules:5
Biological Source:Enterobacteria phage f1
Polymer Type:polypeptide(L)
Description:Capsid protein G8P
Mutations:Y44M
Chain IDs:C (auth: KKK), D (auth: PPP), E (auth: UUU), F (auth: ZZZ), G (auth: eee), H (auth: jjj), I (auth: ooo), J (auth: ttt), K (auth: yyy), N (auth: LLL), O (auth: QQQ), P (auth: VVV), Q (auth: aaa), R (auth: fff), S (auth: kkk), T (auth: ppp), U (auth: uuu), V (auth: 222), Y (auth: MMM), Z (auth: RRR), AA (auth: WWW), BA (auth: bbb), CA (auth: ggg), DA (auth: lll), EA (auth: qqq), FA (auth: vvv), GA (auth: 111), JA (auth: NNN), KA (auth: SSS), LA (auth: XXX), MA (auth: ccc), NA (auth: hhh), OA (auth: mmm), PA (auth: rrr), QA (auth: www), RA (auth: zzz), UA (auth: OOO), VA (auth: TTT), WA (auth: YYY), XA (auth: ddd), YA (auth: iii), ZA (auth: nnn), AB (auth: sss), BB (auth: xxx), CB (auth: 333)
Chain Length:50
Number of Molecules:45
Biological Source:Enterobacteria phage f1
Ligand Molecules
Primary Citation
Cryo-electron microscopy of the f1 filamentous phage reveals insights into viral infection and assembly.
Nat Commun 14 2724 2724 (2023)
PMID: 37169795 DOI: 10.1038/s41467-023-37915-w

Abstact

Phages are viruses that infect bacteria and dominate every ecosystem on our planet. As well as impacting microbial ecology, physiology and evolution, phages are exploited as tools in molecular biology and biotechnology. This is particularly true for the Ff (f1, fd or M13) phages, which represent a widely distributed group of filamentous viruses. Over nearly five decades, Ffs have seen an extraordinary range of applications, yet the complete structure of the phage capsid and consequently the mechanisms of infection and assembly remain largely mysterious. In this work, we use cryo-electron microscopy and a highly efficient system for production of short Ff-derived nanorods to determine a structure of a filamentous virus including the tips. We show that structure combined with mutagenesis can identify phage domains that are important in bacterial attack and for release of new progeny, allowing new models to be proposed for the phage lifecycle.

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Disease

Primary Citation of related structures