8B3F image
Deposition Date 2022-09-16
Release Date 2023-09-27
Last Version Date 2025-07-02
Entry Detail
PDB ID:
8B3F
Keywords:
TRANSCRIPTION
Title:
Pol II-CSB-CSA-DDB1-ELOF1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Sus scrofa domesticus (Taxon ID: 9825)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8B3F validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit
Chain IDs:A
Chain Length:396
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:A0A8D1DPV6 Pfam ID:PF04997, PF00623, PF04983, PF05000, PF04998, PF04992, PF04990, PF05001
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit beta
Chain IDs:B
Chain Length:1496
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:I3LGP4 Pfam ID:PF04563, PF04561, PF04565, PF04566, PF04567, PF00562, PF04560
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB3
Chain IDs:C
Chain Length:275
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:I3LCH3 Pfam ID:PF01193, PF01000
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA polymerase II subunit D
Chain IDs:D
Chain Length:142
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:A0A4X1VM56 Pfam ID:PF03874
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit E
Gene (Uniprot):POLR2E
Chain IDs:E
Chain Length:210
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:I3LSI7 Pfam ID:PF03871, PF01191
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit F
Chain IDs:F
Chain Length:127
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:A0A4X1VEK9 Pfam ID:PF01192
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB7
Chain IDs:G
Chain Length:172
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:A0A4X1VKG7 Pfam ID:PF03876, PF00575
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC3
Chain IDs:H
Chain Length:150
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:I3LCB2 Pfam ID:PF03870
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase II subunit RPB9
Gene (Uniprot):POLR2I
Chain IDs:I
Chain Length:125
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:P60899 Pfam ID:PF02150, PF01096
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerases I, II, and III subunit RPABC5
Chain IDs:J
Chain Length:67
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:A0A8W4F9W9 Pfam ID:PF01194
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA_pol_L_2 domain-containing protein
Chain IDs:K
Chain Length:117
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:F1RKE4 Pfam ID:PF13656
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA polymerase II subunit K
Chain IDs:L
Chain Length:58
Number of Molecules:1
Biological Source:Sus scrofa domesticus
UniProt ID:A0A4X1TRS6 Pfam ID:PF03604
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription elongation factor 1 homolog
Chain IDs:M
Chain Length:83
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:A0A8D1B522 Pfam ID:PF05129
Polymer Type:polydeoxyribonucleotide
Molecule:NTS
Chain IDs:N
Chain Length:52
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:RNA
Chain IDs:O (auth: P)
Chain Length:10
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:TS
Chain IDs:P (auth: T)
Chain Length:52
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA excision repair protein ERCC-8
Gene (Uniprot):ERCC8
Chain IDs:Q (auth: a)
Chain Length:396
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q13216 Pfam ID:PF00400
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA excision repair protein ERCC-6
Gene (Uniprot):ERCC6
Chain IDs:R (auth: b)
Chain Length:1496
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q03468 Pfam ID:PF00176, PF00271
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA damage-binding protein 1
Gene (Uniprot):DDB1
Chain IDs:S (auth: d)
Chain Length:142
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q16531 Pfam ID:PF10433, PF03178
Ligand Molecules
MG
ZN
Primary Citation
Pol II-CSB-CSA-DDB1-ELOF1 structure.
To Be Published ? ? ? (?)
Primary Citation of related structures
8B3F