ISDA: 8AXP

Deposition Date 2022-08-31

Release Date 2022-11-09

Last Version Date 2024-01-31

Entry Detail

PDB ID:

8AXP

Keywords:

HYDROLASE

Title:

Neisseria gonorrhoeae peptidyl-tRNA hydrolase complexed with an XChem hit.

Biological Source:

Source Organism:

Neisseria gonorrhoeae (Taxon ID: 485)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.83 Å

R-Value Free:

0.36

R-Value Work:

0.33

R-Value Observed:

0.33

Space Group:

P 21 21 21

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Peptidyl-tRNA hydrolase
Gene (Uniprot):pth
Chain IDs:A (auth: B), B (auth: A)
Chain Length:192
Number of Molecules:2
Biological Source:Neisseria gonorrhoeae

UniProt ID:B4RK78 Pfam ID:PF01195

Ligand Molecules

O0J

SO4

Primary Citation

Synthesis of a Thiazole Library via an Iridium-Catalyzed Sulfur Ylide Insertion Reaction.

Hassell-Hart, S, Speranzini, E, Srikwanjai, S, Hossack, E, Roe, S.M, Fearon, D, Akinbosede, D, Hare, S, Spencer, J.Show

Org.Lett. 24 7924 7927 (2022)

PMID: 36265082 DOI: 10.1021/acs.orglett.2c02996

Abstact

A library of thiazoles and selenothiazoles were synthesized via Ir-catalyzed ylide insertion chemistry. This process is a functional group, particularly heterocycle-substituent tolerant. This was applied to the synthesis of fanetizole, an anti-inflammatory drug, and a thiazole-containing drug fragment that binds to the peptidyl-tRNA hydrolase (Pth) in Neisseria gonorrheae bacteria.

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Chemical

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Primary Citation of related structures

Abstact

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