8AXA image
Entry Detail
PDB ID:
8AXA
EMDB ID:
Title:
Cryo-EM structure of shCas12k-sgRNA-dsDNA ternary complex (type V-K CRISPR-associated transposon)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-08-31
Release Date:
2024-04-10
Method Details:
Experimental Method:
Resolution:
2.96 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cas12k
Chain IDs:A
Chain Length:651
Number of Molecules:1
Biological Source:Scytonema hofmannii
Polymer Type:polyribonucleotide
Description:sgRNA
Chain IDs:B
Chain Length:261
Number of Molecules:1
Biological Source:Scytonema hofmannii
Polymer Type:polydeoxyribonucleotide
Description:DNA target strand
Chain IDs:C
Chain Length:55
Number of Molecules:1
Biological Source:Scytonema hofmannii
Polymer Type:polydeoxyribonucleotide
Description:DNA non-target strand
Chain IDs:D
Chain Length:55
Number of Molecules:1
Biological Source:Scytonema hofmannii
Primary Citation
Conformational landscape of the type V-K CRISPR-associated transposon integration assembly.
Mol.Cell 84 2353 2367.e5 (2024)
PMID: 38834066 DOI: 10.1016/j.molcel.2024.05.005

Abstact

CRISPR-associated transposons (CASTs) are mobile genetic elements that co-opt CRISPR-Cas systems for RNA-guided DNA transposition. CASTs integrate large DNA cargos into the attachment (att) site independently of homology-directed repair and thus hold promise for eukaryotic genome engineering. However, the functional diversity and complexity of CASTs hinder an understanding of their mechanisms. Here, we present the high-resolution cryoelectron microscopy (cryo-EM) structure of the reconstituted ∼1 MDa post-transposition complex of the type V-K CAST, together with different assembly intermediates and diverse TnsC filament lengths, thus enabling the recapitulation of the integration complex formation. The results of mutagenesis experiments probing the roles of specific residues and TnsB-binding sites show that transposition activity can be enhanced and suggest that the distance between the PAM and att sites is determined by the lengths of the TnsB C terminus and the TnsC filament. This singular model of RNA-guided transposition provides a foundation for repurposing the system for genome-editing applications.

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