8ATK image
Deposition Date 2022-08-23
Release Date 2023-05-24
Last Version Date 2024-06-19
Entry Detail
PDB ID:
8ATK
Title:
The SH2 domain of mouse SH2B1
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Method Details:
Experimental Method:
Conformers Calculated:
1000
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SH2B adapter protein 1
Gene (Uniprot):Sh2b1
Chain IDs:A
Chain Length:118
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Improved methodology for protein NMR structure calculation using hydrogen bond restraints and ANSURR validation: The SH2 domain of SH2B1.
Structure 31 975 ? (2023)
PMID: 37311460 DOI: 10.1016/j.str.2023.05.012

Abstact

Protein structures calculated using NMR data are less accurate and less well-defined than they could be. Here we use the program ANSURR to show that this deficiency is at least in part due to a lack of hydrogen bond restraints. We describe a protocol to introduce hydrogen bond restraints into the structure calculation of the SH2 domain from SH2B1 in a systematic and transparent way and show that the structures generated are more accurate and better defined as a result. We also show that ANSURR can be used as a guide to know when the structure calculation is good enough to stop.

Legend

Protein

Chemical

Disease

Primary Citation of related structures