8APW image
Entry Detail
PDB ID:
8APW
Title:
Crystal Structure of H. influenzae TrmD in complex with Compound 30
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-08-10
Release Date:
2023-06-14
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.20
R-Value Work:
0.16
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:tRNA (guanine-N(1)-)-methyltransferase
Chain IDs:A
Chain Length:266
Number of Molecules:1
Biological Source:Haemophilus influenzae
Primary Citation
Evaluating the druggability of TrmD, a potential antibacterial target, through design and microbiological profiling of a series of potent TrmD inhibitors.
Bioorg.Med.Chem.Lett. 90 129331 129331 (2023)
PMID: 37187252 DOI: 10.1016/j.bmcl.2023.129331

Abstact

The post-transcriptional modifier tRNA-(N1G37) methyltransferase (TrmD) has been proposed to be essential for growth in many Gram-negative and Gram-positive pathogens, however previously reported inhibitors show only weak antibacterial activity. In this work, optimisation of fragment hits resulted in compounds with low nanomolar TrmD inhibition incorporating features designed to enhance bacterial permeability and covering a range of physicochemical space. The resulting lack of significant antibacterial activity suggests that whilst TrmD is highly ligandable, its essentiality and druggability are called into question.

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