8AOF image
Entry Detail
PDB ID:
8AOF
Title:
Specific covalent inhibitor(16) of ERK2
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-08-08
Release Date:
2022-09-28
Method Details:
Experimental Method:
Resolution:
1.62 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Mitogen-activated protein kinase 1
Chain IDs:A
Chain Length:368
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CME A CYS modified residue
Primary Citation
X-ray Screening of an Electrophilic Fragment Library and Application toward the Development of a Novel ERK 1/2 Covalent Inhibitor.
J.Med.Chem. 65 12319 12333 (2022)
PMID: 36101934 DOI: 10.1021/acs.jmedchem.2c01044

Abstact

Fragment-based drug discovery (FBDD) has become an established method for the identification of efficient starting points for drug discovery programs. In recent years, electrophilic fragment screening has garnered increased attention from both academia and industry to identify novel covalent hits for tool compound or drug development against challenging drug targets. Herein, we describe the design and characterization of an acrylamide-focused electrophilic fragment library and screening campaign against extracellular signal-regulated kinase 2 (ERK2) using high-throughput protein crystallography as the primary hit-finding technology. Several fragments were found to have covalently modified the adenosine triphosphate (ATP) binding pocket Cys166 residue. From these hits, 22, a covalent ATP-competitive inhibitor with improved potency (ERK2 IC50 = 7.8 μM), was developed.

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Primary Citation of related structures