8ANR image
Deposition Date 2022-08-05
Release Date 2023-05-31
Last Version Date 2024-11-06
Entry Detail
PDB ID:
8ANR
Keywords:
Title:
Fucosylated alternate chirality linear peptide FHP30 bound to the fucose binding lectin LecB PA-IIL from Pseudomonas aeruginosa at 1.6 Angstrom resolution.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.62 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.15
Space Group:
P 42 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fucose-binding lectin PA-IIL
Gene (Uniprot):lecB
Chain IDs:A, B
Chain Length:114
Number of Molecules:2
Biological Source:Pseudomonas aeruginosa PAO1
Polymer Type:polypeptide(L)
Molecule:Fucosylated mixed-chirality linear peptide FHP30
Chain IDs:C, D
Chain Length:12
Number of Molecules:2
Biological Source:synthetic construct
Primary Citation
To Fold or Not to Fold: Diastereomeric Optimization of an alpha-Helical Antimicrobial Peptide.
J.Med.Chem. 66 7570 7583 (2023)
PMID: 37227046 DOI: 10.1021/acs.jmedchem.3c00460

Abstact

Membrane disruptive α-helical antimicrobial peptides (AMPs) offer an opportunity to address multidrug resistance; however, most AMPs are toxic and unstable in serum. These limitations can be partly overcome by introducing D-residues, which often confers protease resistance and reduces toxicity without affecting antibacterial activity, presumably due to lowered α-helicity. Here, we investigated 31 diastereomers of the α-helical AMP KKLLKLLKLLL. Three diastereomers containing two, three, and four D-residues showed increased antibacterial effects, comparable hemolysis, reduced toxicity against HEK293 cells, and excellent serum stability, while another diastereomer with four D-residues additionally displayed lower hemolysis. X-ray crystallography confirmed that high or low α-helicity as measured by circular dichroism indicated α-helical or disordered structures independently of the number of chirality switched residues. In contrast to previous reports, α-helicity across diastereomers correlated with both antibacterial activity and hemolysis and revealed a complex relationship between stereochemistry, activity, and toxicity, highlighting the potential of diastereomers for property optimization.

Legend

Protein

Chemical

Disease

Primary Citation of related structures