8AHX image
Entry Detail
PDB ID:
8AHX
EMDB ID:
Title:
Cryo-EM structure of the nitrogen-fixation associated NADH:ferredoxin oxidoreductase RNF from Azotobacter vinelandii
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-07-24
Release Date:
2023-11-01
Method Details:
Experimental Method:
Resolution:
3.11 Å
Aggregation State:
CELL
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ion-translocating oxidoreductase complex subunit A
Chain IDs:A
Chain Length:190
Number of Molecules:1
Biological Source:Azotobacter vinelandii DJ
Polymer Type:polypeptide(L)
Description:Ion-translocating oxidoreductase complex subunit B
Chain IDs:B
Chain Length:174
Number of Molecules:1
Biological Source:Azotobacter vinelandii DJ
Polymer Type:polypeptide(L)
Description:Ion-translocating oxidoreductase complex subunit C
Chain IDs:C
Chain Length:496
Number of Molecules:1
Biological Source:Azotobacter vinelandii DJ
Polymer Type:polypeptide(L)
Description:Ion-translocating oxidoreductase complex subunit D
Chain IDs:D
Chain Length:366
Number of Molecules:1
Biological Source:Azotobacter vinelandii DJ
Polymer Type:polypeptide(L)
Description:Ion-translocating oxidoreductase complex subunit E
Chain IDs:E
Chain Length:238
Number of Molecules:1
Biological Source:Azotobacter vinelandii DJ
Polymer Type:polypeptide(L)
Description:Ion-translocating oxidoreductase complex subunit G
Chain IDs:F (auth: G)
Chain Length:237
Number of Molecules:1
Biological Source:Azotobacter vinelandii DJ
Polymer Type:polypeptide(L)
Description:Protein RnfH
Chain IDs:G (auth: H)
Chain Length:86
Number of Molecules:1
Biological Source:Azotobacter vinelandii DJ
Primary Citation
Architecture of the RNF1 complex that drives biological nitrogen fixation.
Nat.Chem.Biol. ? ? ? (2024)
PMID: 38890433 DOI: 10.1038/s41589-024-01641-1

Abstact

Biological nitrogen fixation requires substantial metabolic energy in form of ATP as well as low-potential electrons that must derive from central metabolism. During aerobic growth, the free-living soil diazotroph Azotobacter vinelandii transfers electrons from the key metabolite NADH to the low-potential ferredoxin FdxA that serves as a direct electron donor to the dinitrogenase reductases. This process is mediated by the RNF complex that exploits the proton motive force over the cytoplasmic membrane to lower the midpoint potential of the transferred electron. Here we report the cryogenic electron microscopy structure of the nitrogenase-associated RNF complex of A. vinelandii, a seven-subunit membrane protein assembly that contains four flavin cofactors and six iron-sulfur centers. Its function requires the strict coupling of electron and proton transfer but also involves major conformational changes within the assembly that can be traced with a combination of electron microscopy and modeling.

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Primary Citation of related structures