8AH1 image
Entry Detail
PDB ID:
8AH1
Keywords:
Title:
BK Polyomavirus VP1 mutant N-Q
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-07-20
Release Date:
2023-02-22
Method Details:
Experimental Method:
Resolution:
2.01 Å
R-Value Free:
0.23
R-Value Work:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Major capsid protein VP1
Chain IDs:A (auth: AAA), B (auth: BBB), C (auth: CCC), D (auth: DDD), E (auth: EEE), F (auth: FFF), G (auth: GGG), H (auth: HHH), I (auth: III), J (auth: JJJ)
Chain Length:271
Number of Molecules:10
Biological Source:Betapolyomavirus hominis
Primary Citation
Structural and functional analysis of natural capsid variants suggests sialic acid-independent entry of BK polyomavirus.
Cell Rep 42 112114 112114 (2023)
PMID: 36790933 DOI: 10.1016/j.celrep.2023.112114

Abstact

BK polyomavirus (BKPyV) is an opportunistic pathogen that uses the b-series gangliosides GD1b and GT1b as entry receptors. Here, we characterize the impact of naturally occurring VP1 mutations on ganglioside binding, VP1 protein structure, and virus tropism. Infectious entry of single mutants E73Q and E73A and the triple mutant A72V-E73Q-E82Q (VQQ) remains sialic acid dependent, and all three variants acquire binding to a-series gangliosides, including GD1a. However, the E73A and VQQ variants lose the ability to infect ganglioside-complemented cells, and this correlates with a clear shift of the BC2 loop in the crystal structures of E73A and VQQ. On the other hand, the K69N mutation in the K69N-E82Q variant leads to a steric clash that precludes sialic acid binding. Nevertheless, this mutant retains significant infectivity in 293TT cells, which is not dependent on heparan sulfate proteoglycans, implying that an unknown sialic acid-independent entry receptor for BKPyV exists.

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