8AFU image
Deposition Date 2022-07-18
Release Date 2023-04-05
Last Version Date 2024-10-23
Entry Detail
PDB ID:
8AFU
Keywords:
Title:
DaArgC - N-acetyl-gamma-glutamyl-phosphate Reductase of Denitrovibrio acetiphilus
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.99 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
I 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:N-acetyl-gamma-glutamyl-phosphate reductase
Gene (Uniprot):argC
Chain IDs:A, B
Chain Length:355
Number of Molecules:2
Biological Source:Denitrovibrio acetiphilus DSM 12809
Ligand Molecules
Primary Citation
Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo.
Nat Commun 14 2682 2682 (2023)
PMID: 37160875 DOI: 10.1038/s41467-023-38072-w

Abstact

Formate can be envisioned at the core of a carbon-neutral bioeconomy, where it is produced from CO2 by (electro-)chemical means and converted into value-added products by enzymatic cascades or engineered microbes. A key step in expanding synthetic formate assimilation is its thermodynamically challenging reduction to formaldehyde. Here, we develop a two-enzyme route in which formate is activated to formyl phosphate and subsequently reduced to formaldehyde. Exploiting the promiscuity of acetate kinase and N-acetyl-γ-glutamyl phosphate reductase, we demonstrate this phosphate (Pi)-based route in vitro and in vivo. We further engineer a formyl phosphate reductase variant with improved formyl phosphate conversion in vivo by suppressing cross-talk with native metabolism and interface the Pi route with a recently developed formaldehyde assimilation pathway to enable C2 compound formation from formate as the sole carbon source in Escherichia coli. The Pi route therefore offers a potent tool in expanding the landscape of synthetic formate assimilation.

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Primary Citation of related structures