8AF0 image
Deposition Date 2022-07-15
Release Date 2022-09-14
Last Version Date 2024-11-06
Entry Detail
PDB ID:
8AF0
Title:
Crystal structure of human angiogenin and RNA duplex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.43 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Angiogenin
Gene (Uniprot):ANG
Mutagens:H114A
Chain IDs:C (auth: A), D (auth: B)
Chain Length:123
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(*GP*CP*CP*CP*GP*CP*CP*UP*GP*UP*CP*AP*CP*GP*CP*GP*GP*GP*C)-3')
Chain IDs:A (auth: C), B (auth: D)
Chain Length:19
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure of angiogenin dimer bound to double-stranded RNA.
Acta Crystallogr.,Sect.F 78 330 337 (2022)
PMID: 36048083 DOI: 10.1107/S2053230X22008317

Abstact

Angiogenin is an unusual member of the RNase A family and is of great interest in multiple pathological contexts. Although it has been assigned various regulatory roles, its core catalytic function is that of an RNA endonuclease. However, its catalytic efficiency is comparatively low and this has been linked to a unique C-terminal helix which partially blocks its RNA-binding site. Assuming that binding to its RNA substrate could trigger a conformational rearrangement, much speculation has arisen on the topic of the interaction of angiogenin with RNA. To date, no structural data on angiogenin-RNA interactions have been available. Here, the structure of angiogenin bound to a double-stranded RNA duplex is reported. The RNA does not reach the active site of angiogenin and no structural arrangement of the C-terminal domain is observed. However, angiogenin forms a previously unobserved crystallographic dimer that makes several backbone interactions with the major and minor grooves of the RNA double helix.

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Protein

Chemical

Disease

Primary Citation of related structures