8AEZ image
Deposition Date 2022-07-14
Release Date 2023-02-22
Last Version Date 2024-10-16
Entry Detail
PDB ID:
8AEZ
Keywords:
Title:
X-ray structure of the deglycosylated receptor binding domain of Env glycoprotein of Simian Foamy virus
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.57 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 32 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp130
Gene (Uniprot):env
Chain IDs:A
Chain Length:340
Number of Molecules:1
Biological Source:Simian foamy virus
Ligand Molecules
Primary Citation
The crystal structure of a simian Foamy Virus receptor binding domain provides clues about entry into host cells.
Nat Commun 14 1262 1262 (2023)
PMID: 36878926 DOI: 10.1038/s41467-023-36923-0

Abstact

The surface envelope glycoprotein (Env) of all retroviruses mediates virus binding to cells and fusion of the viral and cellular membranes. A structure-function relationship for the HIV Env that belongs to the Orthoretrovirus subfamily has been well established. Structural information is however largely missing for the Env of Foamy viruses (FVs), the second retroviral subfamily. In this work we present the X-ray structure of the receptor binding domain (RBD) of a simian FV Env at 2.57 Å resolution, revealing two subdomains and an unprecedented fold. We have generated a model for the organization of the RBDs within the trimeric Env, which indicates that the upper subdomains form a cage-like structure at the apex of the Env, and identified residues K342, R343, R359 and R369 in the lower subdomain as key players for the interaction of the RBD and viral particles with heparan sulfate.

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Primary Citation of related structures
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