8ACB image
Deposition Date 2022-07-05
Release Date 2023-05-17
Last Version Date 2024-07-24
Entry Detail
PDB ID:
8ACB
Title:
CryoEM structure of sweet potato feathery mottle virus VLP
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Genome polyprotein
Chain IDs:A
Chain Length:220
Number of Molecules:1
Biological Source:Sweet potato feathery mottle virus
Polymer Type:polyribonucleotide
Molecule:Single-stranded RNA
Chain IDs:B
Chain Length:5
Number of Molecules:1
Biological Source:Ipomoea batatas
Ligand Molecules
Primary Citation
CryoEM and stability analysis of virus-like particles of potyvirus and ipomovirus infecting a common host.
Commun Biol 6 433 433 (2023)
PMID: 37076658 DOI: 10.1038/s42003-023-04799-x

Abstact

Sweet potato feathery mottle virus (SPFMV) and Sweet potato mild mottle virus (SPMMV) are members of the genera Potyvirus and Ipomovirus, family Potyviridae, sharing Ipomoea batatas as common host, but transmitted, respectively, by aphids and whiteflies. Virions of family members consist of flexuous rods with multiple copies of a single coat protein (CP) surrounding the RNA genome. Here we report the generation of virus-like particles (VLPs) by transient expression of the CPs of SPFMV and SPMMV in the presence of a replicating RNA in Nicotiana benthamiana. Analysis of the purified VLPs by cryo-electron microscopy, gave structures with resolutions of 2.6 and 3.0 Å, respectively, showing a similar left-handed helical arrangement of 8.8 CP subunits per turn with the C-terminus at the inner surface and a binding pocket for the encapsidated ssRNA. Despite their similar architecture, thermal stability studies reveal that SPMMV VLPs are more stable than those of SPFMV.

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Primary Citation of related structures