8A9N image
Deposition Date 2022-06-28
Release Date 2023-07-12
Last Version Date 2024-02-07
Entry Detail
PDB ID:
8A9N
Keywords:
Title:
Structure of DpA polyamine acetyltransferase in complex with 1,3-DAP
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Acetyltransferase
Gene (Uniprot):ABR2091_2278, ABUW_1603, APD33_09545, B9W25_06420, CPI82_05975, EA686_20485, EA722_17035, EJ062_19300, EKS29_07930, F2P40_03430, F4T85_15855, FJU42_16945, FJU79_01610, FPK81_02945, FQZ18_07395, GNY86_02530, GSE42_12350, H0529_02675, IAG11_07575, IHV20_11390, IMO23_11370, LV35_02180, MKP18_000503, SAMEA104305318_03080, SAMEA104305340_02732, SAMEA4394745_02428
Chain IDs:A, B
Chain Length:154
Number of Molecules:2
Biological Source:Acinetobacter baumannii
Primary Citation
A polyamine acetyltransferase regulates the motility and biofilm formation of Acinetobacter baumannii.
Nat Commun 14 3531 3531 (2023)
PMID: 37316480 DOI: 10.1038/s41467-023-39316-5

Abstact

Acinetobacter baumannii is a nosocomial pathogen highly resistant to environmental changes and antimicrobial treatments. Regulation of cellular motility and biofilm formation is important for its virulence, although it is poorly described at the molecular level. It has been previously reported that Acinetobacter genus specifically produces a small positively charged metabolite, polyamine 1,3-diaminopropane, that has been associated with cell motility and virulence. Here we show that A. baumannii encodes novel acetyltransferase, Dpa, that acetylates 1,3-diaminopropane, directly affecting the bacterium motility. Expression of dpa increases in bacteria that form pellicle and adhere to eukaryotic cells as compared to planktonic bacterial cells, suggesting that cell motility is linked to the pool of non-modified 1,3-diaminopropane. Indeed, deletion of dpa hinders biofilm formation and increases twitching motion confirming the impact of balancing the levels of 1,3-diaminopropane on cell motility. The crystal structure of Dpa reveals topological and functional differences from other bacterial polyamine acetyltransferases, adopting a β-swapped quaternary arrangement similar to that of eukaryotic polyamine acetyltransferases with a central size exclusion channel that sieves through the cellular polyamine pool. The structure of catalytically impaired DpaY128F in complex with the reaction product shows that binding and orientation of the polyamine substrates are conserved between different polyamine-acetyltransferases.

Legend

Protein

Chemical

Disease

Primary Citation of related structures