8A8H image
Deposition Date 2022-06-23
Release Date 2023-04-26
Last Version Date 2024-02-07
Entry Detail
PDB ID:
8A8H
Keywords:
Title:
APS kinase from Methanothermococcus thermolithotrophicus refined to 1.77 A
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.77 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:APS kinase from Methanothermococcus thermolithotrophicus
Chain IDs:A, B, C, D
Chain Length:192
Number of Molecules:4
Biological Source:Methanothermococcus thermolithotrophicus DSM 2095
Primary Citation
Assimilatory sulfate reduction in the marine methanogen Methanothermococcus thermolithotrophicus.
Nat Microbiol 8 1227 1239 (2023)
PMID: 37277534 DOI: 10.1038/s41564-023-01398-8

Abstact

Methanothermococcus thermolithotrophicus is the only known methanogen that grows on sulfate as its sole sulfur source, uniquely uniting methanogenesis and sulfate reduction. Here we use physiological, biochemical and structural analyses to provide a snapshot of the complete sulfate reduction pathway of this methanogenic archaeon. We find that later steps in this pathway are catalysed by atypical enzymes. PAPS (3'-phosphoadenosine 5'-phosphosulfate) released by APS kinase is converted into sulfite and 3'-phosphoadenosine 5'-phosphate (PAP) by a PAPS reductase that is similar to the APS reductases of dissimilatory sulfate reduction. A non-canonical PAP phosphatase then hydrolyses PAP. Finally, the F420-dependent sulfite reductase converts sulfite to sulfide for cellular assimilation. While metagenomic and metatranscriptomic studies suggest that the sulfate reduction pathway is present in several methanogens, the sulfate assimilation pathway in M. thermolithotrophicus is distinct. We propose that this pathway was 'mix-and-matched' through the acquisition of assimilatory and dissimilatory enzymes from other microorganisms and then repurposed to fill a unique metabolic role.

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