8A6M image
Deposition Date 2022-06-18
Release Date 2023-05-24
Last Version Date 2024-06-19
Entry Detail
PDB ID:
8A6M
Title:
Phosphatidylserine-dependent synaptic vesicle membrane sculpting by synaptogyrin
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
470
Conformers Submitted:
10
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Isoform 1B of Synaptogyrin-1
Gene (Uniprot):SYNGR1
Chain IDs:A
Chain Length:210
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Phosphatidylserine-dependent structure of synaptogyrin remodels the synaptic vesicle membrane.
Nat.Struct.Mol.Biol. 30 926 934 (2023)
PMID: 37217654 DOI: 10.1038/s41594-023-01004-9

Abstact

Synaptic vesicles are small membrane-enclosed organelles that store neurotransmitters at presynaptic terminals. The uniform morphology of synaptic vesicles is important for brain function, because it enables the storage of well-defined amounts of neurotransmitters and thus reliable synaptic transmission. Here, we show that the synaptic vesicle membrane protein synaptogyrin cooperates with the lipid phosphatidylserine to remodel the synaptic vesicle membrane. Using NMR spectroscopy, we determine the high-resolution structure of synaptogyrin and identify specific binding sites for phosphatidylserine. We further show that phosphatidylserine binding changes the transmembrane structure of synaptogyrin and is critical for membrane bending and the formation of small vesicles. Cooperative binding of phosphatidylserine to both a cytoplasmic and intravesicular lysine-arginine cluster in synaptogyrin is required for the formation of small vesicles. Together with other synaptic vesicle proteins, synaptogyrin thus can sculpt the membrane of synaptic vesicles.

Legend

Protein

Chemical

Disease

Primary Citation of related structures