8A44 image
Deposition Date 2022-06-10
Release Date 2023-06-07
Last Version Date 2024-10-16
Entry Detail
PDB ID:
8A44
Keywords:
Title:
Plasmodium vivax Duffy binding protein region II bound the DARC ectodomain and monoclonal antibody DB1
Biological Source:
Source Organism:
Plasmodium vivax (Taxon ID: 5855)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.49 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Duffy binding protein
Chain IDs:A
Chain Length:294
Number of Molecules:1
Biological Source:Plasmodium vivax
Polymer Type:polypeptide(L)
Molecule:Atypical chemokine receptor 1
Chain IDs:B
Chain Length:60
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Heavy chain of monoclonal antibody DB1
Chain IDs:C
Chain Length:225
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Light chain of monoclonal antibody DB1
Chain IDs:D
Chain Length:213
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural basis for DARC binding in reticulocyte invasion by Plasmodium vivax.
Nat Commun 14 3637 3637 (2023)
PMID: 37336887 DOI: 10.1038/s41467-023-39357-w

Abstact

The symptoms of malaria occur during the blood stage of infection, when the parasite replicates within human red blood cells. The human malaria parasite, Plasmodium vivax, selectively invades reticulocytes in a process which requires an interaction between the ectodomain of the human DARC receptor and the Plasmodium vivax Duffy-binding protein, PvDBP. Previous studies have revealed that a small helical peptide from DARC binds to region II of PvDBP (PvDBP-RII). However, it is also known that sulphation of tyrosine residues on DARC affects its binding to PvDBP and these residues were not observed in previous structures. We therefore present the structure of PvDBP-RII bound to sulphated DARC peptide, showing that a sulphate on tyrosine 41 binds to a charged pocket on PvDBP-RII. We use molecular dynamics simulations, affinity measurements and growth-inhibition experiments in parasites to confirm the importance of this interaction. We also reveal the epitope for vaccine-elicited growth-inhibitory antibody DB1. This provides a complete understanding of the binding of PvDBP-RII to DARC and will guide the design of vaccines and therapeutics to target this essential interaction.

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Primary Citation of related structures