8A0G image
Entry Detail
PDB ID:
8A0G
Keywords:
Title:
Human deoxyhypusine synthase with trapped transition state
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-05-27
Release Date:
2023-04-05
Method Details:
Experimental Method:
Resolution:
1.84 Å
R-Value Free:
0.16
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Deoxyhypusine synthase
Chain IDs:A, B
Chain Length:371
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
5GG A LYS modified residue
CSS A CYS modified residue
Primary Citation
Cryo-EM structure of human eIF5A-DHS complex reveals the molecular basis of hypusination-associated neurodegenerative disorders.
Nat Commun 14 1698 1698 (2023)
PMID: 36973244 DOI: 10.1038/s41467-023-37305-2

Abstact

Hypusination is a unique post-translational modification of the eukaryotic translation factor 5A (eIF5A) that is essential for overcoming ribosome stalling at polyproline sequence stretches. The initial step of hypusination, the formation of deoxyhypusine, is catalyzed by deoxyhypusine synthase (DHS), however, the molecular details of the DHS-mediated reaction remained elusive. Recently, patient-derived variants of DHS and eIF5A have been linked to rare neurodevelopmental disorders. Here, we present the cryo-EM structure of the human eIF5A-DHS complex at 2.8 Å resolution and a crystal structure of DHS trapped in the key reaction transition state. Furthermore, we show that disease-associated DHS variants influence the complex formation and hypusination efficiency. Hence, our work dissects the molecular details of the deoxyhypusine synthesis reaction and reveals how clinically-relevant mutations affect this crucial cellular process.

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Protein

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Disease

Primary Citation of related structures