7ZZ2 image
Entry Detail
PDB ID:
7ZZ2
EMDB ID:
Keywords:
Title:
Cryo-EM structure of "CT pyr" conformation of Lactococcus lactis pyruvate carboxylase with acetyl-CoA
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-05-25
Release Date:
2022-10-12
Method Details:
Experimental Method:
Resolution:
2.48 Å
Aggregation State:
3D ARRAY
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Pyruvate carboxylase
Chain IDs:A
Chain Length:1143
Number of Molecules:1
Biological Source:Lactococcus lactis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
KCX A LYS modified residue
Primary Citation
CryoEM structural exploration of catalytically active enzyme pyruvate carboxylase.
Nat Commun 13 6185 6185 (2022)
PMID: 36261450 DOI: 10.1038/s41467-022-33987-2

Abstact

Pyruvate carboxylase (PC) is a tetrameric enzyme that contains two active sites per subunit that catalyze two consecutive reactions. A mobile domain with an attached prosthetic biotin links both reactions, an initial biotin carboxylation and the subsequent carboxyl transfer to pyruvate substrate to produce oxaloacetate. Reaction sites are at long distance, and there are several co-factors that play as allosteric regulators. Here, using cryoEM we explore the structure of active PC tetramers focusing on active sites and on the conformational space of the oligomers. The results capture the mobile domain at both active sites and expose catalytic steps of both reactions at high resolution, allowing the identification of substrates and products. The analysis of catalytically active PC tetramers reveals the role of certain motions during enzyme functioning, and the structural changes in the presence of additional cofactors expose the mechanism for allosteric regulation.

Legend

Protein

Chemical

Disease

Primary Citation of related structures