7ZVY image
Deposition Date 2022-05-17
Release Date 2022-08-24
Last Version Date 2024-05-01
Entry Detail
PDB ID:
7ZVY
Keywords:
Title:
Thermococcus kadokarensis phosphomannose isomerase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.16 Å
R-Value Free:
0.28
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 31
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cupin_2 domain-containing protein
Gene (Uniprot):TK0503
Chain IDs:A, C, D, F
Chain Length:116
Number of Molecules:4
Biological Source:Thermococcus kodakarensis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cupin_2 domain-containing protein
Gene (Uniprot):TK0503
Chain IDs:B
Chain Length:114
Number of Molecules:1
Biological Source:Thermococcus kodakarensis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cupin_2 domain-containing protein
Gene (Uniprot):TK0503
Chain IDs:E, H
Chain Length:110
Number of Molecules:2
Biological Source:Thermococcus kodakarensis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cupin_2 domain-containing protein
Gene (Uniprot):TK0503
Chain IDs:G
Chain Length:105
Number of Molecules:1
Biological Source:Thermococcus kodakarensis
Ligand Molecules
Primary Citation
Unravelling the Adaptation Mechanisms to High Pressure in Proteins.
Int J Mol Sci 23 ? ? (2022)
PMID: 35955607 DOI: 10.3390/ijms23158469

Abstact

Life is thought to have appeared in the depth of the sea under high hydrostatic pressure. Nowadays, it is known that the deep biosphere hosts a myriad of life forms thriving under high-pressure conditions. However, the evolutionary mechanisms leading to their adaptation are still not known. Here, we show the molecular bases of these mechanisms through a joint structural and dynamical study of two orthologous proteins. We observed that pressure adaptation involves the decoupling of protein-water dynamics and the elimination of cavities in the protein core. This is achieved by rearranging the charged residues on the protein surface and using bulkier hydrophobic residues in the core. These findings will be the starting point in the search for a complete genomic model explaining high-pressure adaptation.

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Protein

Chemical

Disease

Primary Citation of related structures