7ZVE image
Deposition Date 2022-05-15
Release Date 2023-08-23
Last Version Date 2024-11-20
Entry Detail
PDB ID:
7ZVE
Keywords:
Title:
K403 acetylated glucose-6-phosphate dehydrogenase (G6PD)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.28 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glucose-6-phosphate 1-dehydrogenase
Gene (Uniprot):G6PD
Chain IDs:A
Chain Length:501
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glucose-6-phosphate 1-dehydrogenase
Gene (Uniprot):G6PD
Chain IDs:B
Chain Length:498
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glucose-6-phosphate 1-dehydrogenase
Gene (Uniprot):G6PD
Chain IDs:C
Chain Length:497
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glucose-6-phosphate 1-dehydrogenase
Gene (Uniprot):G6PD
Chain IDs:D, H
Chain Length:499
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glucose-6-phosphate 1-dehydrogenase
Gene (Uniprot):G6PD
Chain IDs:E
Chain Length:500
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glucose-6-phosphate 1-dehydrogenase
Gene (Uniprot):G6PD
Chain IDs:F
Chain Length:497
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glucose-6-phosphate 1-dehydrogenase
Gene (Uniprot):G6PD
Chain IDs:G
Chain Length:496
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ALY B LYS modified residue
Primary Citation
Acetylation-dependent coupling between G6PD activity and apoptotic signaling.
Nat Commun 14 6208 6208 (2023)
PMID: 37798264 DOI: 10.1038/s41467-023-41895-2

Abstact

Lysine acetylation has been discovered in thousands of non-histone human proteins, including most metabolic enzymes. Deciphering the functions of acetylation is key to understanding how metabolic cues mediate metabolic enzyme regulation and cellular signaling. Glucose-6-phosphate dehydrogenase (G6PD), the rate-limiting enzyme in the pentose phosphate pathway, is acetylated on multiple lysine residues. Using site-specifically acetylated G6PD, we show that acetylation can activate (AcK89) and inhibit (AcK403) G6PD. Acetylation-dependent inactivation is explained by structural studies showing distortion of the dimeric structure and active site of G6PD. We provide evidence for acetylation-dependent K95/97 ubiquitylation of G6PD and Y503 phosphorylation, as well as interaction with p53 and induction of early apoptotic events. Notably, we found that the acetylation of a single lysine residue coordinates diverse acetylation-dependent processes. Our data provide an example of the complex roles of acetylation as a posttranslational modification that orchestrates the regulation of enzymatic activity, posttranslational modifications, and apoptotic signaling.

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Primary Citation of related structures