7ZU8 image
Deposition Date 2022-05-11
Release Date 2022-08-10
Last Version Date 2024-11-13
Entry Detail
PDB ID:
7ZU8
Keywords:
Title:
Crystal Structure of the zymogen form of the glutamic-class prolyl-endopeptidase neprosin at 2.05 A resolution in presence of the crystallophore Lu-Xo4.
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.05 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glutamyl endopeptidase Neprosin
Chain IDs:A
Chain Length:389
Number of Molecules:1
Biological Source:Nepenthes ventricosa x Nepenthes alata
Primary Citation
Molecular and in vivo studies of a glutamate-class prolyl-endopeptidase for coeliac disease therapy.
Nat Commun 13 4446 4446 (2022)
PMID: 35915115 DOI: 10.1038/s41467-022-32215-1

Abstact

The digestion of gluten generates toxic peptides, among which a highly immunogenic proline-rich 33-mer from wheat α-gliadin, that trigger coeliac disease. Neprosin from the pitcher plant is a reported prolyl endopeptidase. Here, we produce recombinant neprosin and its mutants, and find that full-length neprosin is a zymogen, which is self-activated at gastric pH by the release of an all-β pro-domain via a pH-switch mechanism featuring a lysine plug. The catalytic domain is an atypical 7+8-stranded β-sandwich with an extended active-site cleft containing an unprecedented pair of catalytic glutamates. Neprosin efficiently degrades both gliadin and the 33-mer in vitro under gastric conditions and is reversibly inactivated at pH > 5. Moreover, co-administration of gliadin and the neprosin zymogen at the ratio 500:1 reduces the abundance of the 33-mer in the small intestine of mice by up to 90%. Neprosin therefore founds a family of eukaryotic glutamate endopeptidases that fulfils requisites for a therapeutic glutenase.

Legend

Protein

Chemical

Disease

Primary Citation of related structures