7ZU0 image
Deposition Date 2022-05-11
Release Date 2022-09-28
Last Version Date 2025-04-16
Entry Detail
PDB ID:
7ZU0
Title:
HOPS tethering complex from yeast
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
4.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase PEP5
Gene (Uniprot):PEP5
Chain IDs:A
Chain Length:1029
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein 16
Gene (Uniprot):VPS16
Chain IDs:B
Chain Length:798
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Vacuolar membrane protein PEP3
Gene (Uniprot):PEP3
Chain IDs:C
Chain Length:918
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein 33
Gene (Uniprot):VPS33
Chain IDs:D
Chain Length:691
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Vacuolar morphogenesis protein 6
Gene (Uniprot):VAM6
Chain IDs:E
Chain Length:1049
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein 41
Gene (Uniprot):VPS41
Chain IDs:F
Chain Length:1016
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Primary Citation

Abstact

Lysosomes are essential for cellular recycling, nutrient signaling, autophagy, and pathogenic bacteria and viruses invasion. Lysosomal fusion is fundamental to cell survival and requires HOPS, a conserved heterohexameric tethering complex. On the membranes to be fused, HOPS binds small membrane-associated GTPases and assembles SNAREs for fusion, but how the complex fulfills its function remained speculative. Here, we used cryo-electron microscopy to reveal the structure of HOPS. Unlike previously reported, significant flexibility of HOPS is confined to its extremities, where GTPase binding occurs. The SNARE-binding module is firmly attached to the core, therefore, ideally positioned between the membranes to catalyze fusion. Our data suggest a model for how HOPS fulfills its dual functionality of tethering and fusion and indicate why it is an essential part of the membrane fusion machinery.

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Primary Citation of related structures