7ZOT image
Deposition Date 2022-04-26
Release Date 2022-10-26
Last Version Date 2024-01-31
Entry Detail
PDB ID:
7ZOT
Keywords:
Title:
crystal structure of PLAAT4 N-terminal domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.74 Å
R-Value Free:
0.20
R-Value Work:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Phospholipase A and acyltransferase 4
Gene (Uniprot):PLAAT4
Chain IDs:A, B
Chain Length:126
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Crystal structure of the phospholipase A and acyltransferase 4 (PLAAT4) catalytic domain.
J.Struct.Biol. 214 107903 107903 (2022)
PMID: 36210037 DOI: 10.1016/j.jsb.2022.107903

Abstact

Phospholipase A and Acyltransferase 4 (PLAAT4) is a class II tumor suppressor, that also plays a role as a restrictor of intracellular Toxoplasma gondii infection through restriction of parasitic vacuole size. The catalytic N-terminal domain (NTD) interacts with the C-terminal domain (CTD), which is important for sub-cellular targeting and enzymatic function. The dynamics of the NTD main (L1) loop and the L2(B6) loop adjacent to the active site, have been shown to be important regulators of enzymatic activity. Here, we present the crystal structure of PLAAT4 NTD, determined from severely intergrown crystals using automated, laser-based crystal harvesting and data reduction technologies. The structure showed the L1 loop in two distinct conformations, highlighting a complex network of interactions likely influencing its conformational flexibility. Ensemble refinement of the crystal structure recapitulates the major correlated motions observed in solution by NMR. Our analysis offers useful insights on millisecond dynamics based on the crystal structure, complementing NMR studies which preclude structural information at this time scale.

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