7ZLJ image
Entry Detail
PDB ID:
7ZLJ
EMDB ID:
Title:
Cryo-EM structure of C-mannosyltransferase CeDPY19, in ternary complex with Dol25-P-C-Man and acceptor peptide, bound to CMT2-Fab and anti-Fab nanobody
Biological Source:
PDB Version:
Deposition Date:
2022-04-15
Release Date:
2023-01-11
Method Details:
Experimental Method:
Resolution:
3.63 Å
Aggregation State:
3D ARRAY
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:C-mannosyltransferase dpy-19
Chain IDs:D (auth: A)
Chain Length:707
Number of Molecules:1
Biological Source:Caenorhabditis elegans
Polymer Type:polypeptide(L)
Description:CMT2-Fab heavy chain
Chain IDs:A (auth: H)
Chain Length:236
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:Anti-Fab nanobody
Chain IDs:B (auth: K)
Chain Length:123
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:CMT2-Fab light chain
Chain IDs:C (auth: L)
Chain Length:215
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:synthetic octapeptide WEHI 1886493
Chain IDs:E (auth: P)
Chain Length:7
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Structure, sequon recognition and mechanism of tryptophan C-mannosyltransferase.
Nat.Chem.Biol. 19 575 584 (2023)
PMID: 36604564 DOI: 10.1038/s41589-022-01219-9

Abstact

C-linked glycosylation is essential for the trafficking, folding and function of secretory and transmembrane proteins involved in cellular communication processes. The tryptophan C-mannosyltransferase (CMT) enzymes that install the modification attach a mannose to the first tryptophan of WxxW/C sequons in nascent polypeptide chains by an unknown mechanism. Here, we report cryogenic-electron microscopy structures of Caenorhabditis elegans CMT in four key states: apo, acceptor peptide-bound, donor-substrate analog-bound and as a trapped ternary complex with both peptide and a donor-substrate mimic bound. The structures indicate how the C-mannosylation sequon is recognized by this CMT and its paralogs, and how sequon binding triggers conformational activation of the donor substrate: a process relevant to all glycosyltransferase C superfamily enzymes. Our structural data further indicate that the CMTs adopt an unprecedented electrophilic aromatic substitution mechanism to enable the C-glycosylation of proteins. These results afford opportunities for understanding human disease and therapeutic targeting of specific CMT paralogs.

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Primary Citation of related structures