7ZJX image
Deposition Date 2022-04-12
Release Date 2022-09-07
Last Version Date 2025-10-01
Entry Detail
PDB ID:
7ZJX
Keywords:
RIBOSOME
Title:
Rabbit 80S ribosome programmed with SECIS and SBP2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Cricket paralysis virus (Taxon ID: 12136)
Rattus norvegicus (Taxon ID: 10116)
Oryctolagus cuniculus (Taxon ID: 9986)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
7ZJX validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Selenocysteine insertion sequence-binding protein 2
Gene (Uniprot):SECISBP2
Chain IDs:A (auth: B)
Chain Length:854
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q96T21 Pfam ID:PF01248
Polymer Type:polyribonucleotide
Molecule:CrPV IRES
Chain IDs:B (auth: I)
Chain Length:163
Number of Molecules:1
Biological Source:Cricket paralysis virus
Polymer Type:polyribonucleotide
Molecule:28S rRNA
Chain IDs:C (auth: L5)
Chain Length:4808
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:5S rRNA
Chain IDs:D (auth: L7)
Chain Length:120
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:5.8S rRNA
Chain IDs:E (auth: L8)
Chain Length:158
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein uL2
Gene (Uniprot):RPL8
Chain IDs:F (auth: LD)
Chain Length:257
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A8B8VPA8 Pfam ID:PF00181, PF03947
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein uL3
Gene (Uniprot):RPL3
Chain IDs:G (auth: LE)
Chain Length:245
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TL06 Pfam ID:PF00297
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L4
Gene (Uniprot):RPL4
Chain IDs:H (auth: LF)
Chain Length:115
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SVW5 Pfam ID:PF00573, PF14374
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal_L18_c domain-containing protein
Chain IDs:I (auth: LG)
Chain Length:297
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:P19949
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L6
Gene (Uniprot):RPL6
Chain IDs:J (auth: LH)
Chain Length:291
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SKF7 Pfam ID:PF03868, PF01159
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal Protein uL30
Gene (Uniprot):HJG63_016928
Chain IDs:K (auth: LI)
Chain Length:247
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A7J8C453 Pfam ID:PF08079, PF00327
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein eL8
Gene (Uniprot):RPL7A
Chain IDs:L (auth: LJ)
Chain Length:117
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:P62424 Pfam ID:PF01248
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L9
Gene (Uniprot):RPL9
Chain IDs:M (auth: LK)
Chain Length:192
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SWI6 Pfam ID:PF00347
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L10
Gene (Uniprot):RPL10
Chain IDs:N (auth: LL)
Chain Length:214
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:B7NZQ2 Pfam ID:PF00252
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L11
Gene (Uniprot):RPL11
Chain IDs:O (auth: LM)
Chain Length:178
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TUB8 Pfam ID:PF00281, PF00673
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein eL13
Gene (Uniprot):RPL13
Chain IDs:P (auth: LO)
Chain Length:51
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TKB3 Pfam ID:PF01294
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L14
Gene (Uniprot):RPL14
Chain IDs:Q (auth: LP)
Chain Length:128
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SZ12 Pfam ID:PF01929
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L15
Gene (Uniprot):RPL15
Chain IDs:R (auth: LQ)
Chain Length:204
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1T0C1 Pfam ID:PF00827
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein uL13
Gene (Uniprot):RPL13A
Chain IDs:S (auth: LR)
Chain Length:92
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A0N8ETI8 Pfam ID:PF00572
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein uL22
Gene (Uniprot):Rpl17
Chain IDs:T (auth: LS)
Chain Length:184
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A8J4KQ25 Pfam ID:PF00237
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal Protein eL18
Gene (Uniprot):RPL18
Chain IDs:U (auth: LT)
Chain Length:188
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:F6QKI9 Pfam ID:PF17135
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L19
Gene (Uniprot):CK820_G0039174
Chain IDs:V (auth: LU)
Chain Length:196
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A2J8KH59 Pfam ID:PF01280
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein eL20
Chain IDs:W (auth: LV)
Chain Length:176
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A1Z5LHJ5 Pfam ID:PF01775
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L21
Gene (Uniprot):RPL21
Chain IDs:X (auth: LW)
Chain Length:160
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SHQ2 Pfam ID:PF01157
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein eL22
Gene (Uniprot):RPL22
Chain IDs:Y (auth: LX)
Chain Length:217
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:Q4R5I3 Pfam ID:PF01776
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L23
Chain IDs:Z (auth: LY)
Chain Length:140
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A3P9HH38 Pfam ID:PF00238
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L24
Gene (Uniprot):RPL24
Chain IDs:AA (auth: LZ)
Chain Length:157
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SE28 Pfam ID:PF01246
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal_L23eN domain-containing protein
Gene (Uniprot):RPL23A
Chain IDs:BA (auth: La)
Chain Length:156
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SE76 Pfam ID:PF03939, PF00276
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L26
Gene (Uniprot):FD755_020861
Chain IDs:CA (auth: Lb)
Chain Length:145
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A5N3X333 Pfam ID:PF16906, PF00467
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27
Gene (Uniprot):Rpl27
Chain IDs:DA (auth: Lc)
Chain Length:136
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A851LWS6 Pfam ID:PF00467, PF01777
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27a
Gene (Uniprot):RPL27A
Chain IDs:EA (auth: Ld)
Chain Length:257
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SNY0 Pfam ID:PF00828
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L29
Gene (Uniprot):RPL29
Chain IDs:FA (auth: Le)
Chain Length:245
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SGR6 Pfam ID:PF01779
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L30
Gene (Uniprot):RPL30
Chain IDs:GA (auth: Lf)
Chain Length:115
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TDL2 Pfam ID:PF01248
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L31
Gene (Uniprot):RPL31
Chain IDs:HA (auth: Lg)
Chain Length:297
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SHG0 Pfam ID:PF01198
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L32
Chain IDs:IA (auth: Lh)
Chain Length:291
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TUN8 Pfam ID:PF01655
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L35a
Gene (Uniprot):RPL35A
Chain IDs:JA (auth: Li)
Chain Length:247
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SF08 Pfam ID:PF01247
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L34
Gene (Uniprot):RPL34
Chain IDs:KA (auth: Lj)
Chain Length:117
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TXG5 Pfam ID:PF01199
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L35
Gene (Uniprot):RPL35
Chain IDs:LA (auth: Lk)
Chain Length:192
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SIT5 Pfam ID:PF00831
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L36
Gene (Uniprot):Rpl36
Chain IDs:MA (auth: Ll)
Chain Length:214
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A1S3FQR5 Pfam ID:PF01158
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L37
Gene (Uniprot):RPL37
Chain IDs:NA (auth: Lm)
Chain Length:178
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:U3KPD5 Pfam ID:PF01907
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L38
Gene (Uniprot):RPL38
Chain IDs:OA (auth: Ln)
Chain Length:70
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A1A7W9T9 Pfam ID:PF01781
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein eL39
Gene (Uniprot):LOC100343258
Chain IDs:PA (auth: Lo)
Chain Length:51
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TTN1 Pfam ID:PF00832
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L40
Gene (Uniprot):UBA52
Chain IDs:QA (auth: Lp)
Chain Length:128
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A8C8Y9V5 Pfam ID:PF00240, PF01020
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein eL42
Gene (Uniprot):mPipKuh1_015125
Chain IDs:RA (auth: Lq)
Chain Length:204
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A7J7V6K8 Pfam ID:PF00935
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein eL43
Gene (Uniprot):RPL37A
Chain IDs:SA (auth: Lr)
Chain Length:92
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A6I9ZMF9 Pfam ID:PF01780
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein eL28
Gene (Uniprot):EI555_020534
Chain IDs:TA (auth: Ls)
Chain Length:184
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A4U1EJN3 Pfam ID:PF01778
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein
Gene (Uniprot):RPL10A
Chain IDs:UA (auth: Lx)
Chain Length:217
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SKZ8 Pfam ID:PF00687
Polymer Type:polyribonucleotide
Molecule:GPX4 SECIS element
Chain IDs:VA (auth: S)
Chain Length:855
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polyribonucleotide
Molecule:18S rRNA
Chain IDs:WA (auth: S2)
Chain Length:1870
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S27
Gene (Uniprot):HJG63_016964
Chain IDs:XA (auth: SB)
Chain Length:84
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A7J8BG50 Pfam ID:PF01667
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S28
Gene (Uniprot):DUI87_22462
Chain IDs:YA (auth: SC)
Chain Length:69
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A3M0JHZ8 Pfam ID:PF01200
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin carboxyl extension protein 80
Gene (Uniprot):RPS27A
Chain IDs:ZA (auth: SD)
Chain Length:156
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A8C0T835 Pfam ID:PF00240, PF01599
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S30
Gene (Uniprot):FAU
Chain IDs:AB (auth: SE)
Chain Length:145
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1T8A2 Pfam ID:PF00240, PF04758
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein eS26
Chain IDs:BB (auth: SF)
Chain Length:115
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A2K5LQY6 Pfam ID:PF01283
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein subunit beta-2-like 1
Gene (Uniprot):RACK1
Chain IDs:CB (auth: SG)
Chain Length:83
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A2K6K8B0 Pfam ID:PF00400
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S29
Gene (Uniprot):RPS29
Chain IDs:DB (auth: SH)
Chain Length:56
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1U7M4 Pfam ID:PF00253
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein SA
Gene (Uniprot):RPSA
Chain IDs:EB (auth: SL)
Chain Length:25
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TLT8 Pfam ID:PF00318, PF16122
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S3a
Gene (Uniprot):RPS3A
Chain IDs:FB (auth: SM)
Chain Length:264
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SS70 Pfam ID:PF01015
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein uS5
Gene (Uniprot):RPS2
Chain IDs:GB (auth: SN)
Chain Length:293
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:O18789 Pfam ID:PF00333, PF03719
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S3
Gene (Uniprot):RPS3
Chain IDs:HB (auth: SO)
Chain Length:281
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TNM3 Pfam ID:PF07650, PF00189
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S4
Gene (Uniprot):RPS4X
Chain IDs:IB (auth: SP)
Chain Length:263
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:Q76N24 Pfam ID:PF08071, PF00900, PF00467, PF16121
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S5
Gene (Uniprot):RPS5
Chain IDs:JB (auth: SQ)
Chain Length:204
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A5F9DBR8 Pfam ID:PF00177
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S6
Gene (Uniprot):RPS6
Chain IDs:KB (auth: SR)
Chain Length:249
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:P62753 Pfam ID:PF01092
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S7
Gene (Uniprot):RPS7
Chain IDs:LB (auth: SS)
Chain Length:432
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SVB0
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S8
Gene (Uniprot):RPS8
Chain IDs:MB (auth: ST)
Chain Length:208
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:Q5E958 Pfam ID:PF01201
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S9
Gene (Uniprot):RPS9
Chain IDs:NB (auth: SU)
Chain Length:194
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:B7NZS8 Pfam ID:PF00163, PF01479
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S10_plectin domain-containing protein
Chain IDs:OB (auth: SV)
Chain Length:165
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TPV3 Pfam ID:PF03501
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S11
Gene (Uniprot):RPS11
Chain IDs:PB (auth: SW)
Chain Length:158
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TRM4 Pfam ID:PF16205, PF00366
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S12
Gene (Uniprot):RPS12
Chain IDs:QB (auth: SX)
Chain Length:132
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SFR8 Pfam ID:PF01248
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S13
Gene (Uniprot):RPS13
Chain IDs:RB (auth: SY)
Chain Length:151
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A663F1C0 Pfam ID:PF08069, PF00312
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein uS11
Gene (Uniprot):Rps14
Chain IDs:SB (auth: SZ)
Chain Length:151
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A7L0BEC6 Pfam ID:PF00411
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S15
Gene (Uniprot):RPS15
Chain IDs:TB (auth: Sa)
Chain Length:145
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1U0Q2 Pfam ID:PF00203
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein uS9
Gene (Uniprot):RPS16
Chain IDs:UB (auth: Sb)
Chain Length:84
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SGX4 Pfam ID:PF00380
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S17
Gene (Uniprot):RPS17
Chain IDs:VB (auth: Sc)
Chain Length:69
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TU13 Pfam ID:PF00833
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S18
Gene (Uniprot):RPS18
Chain IDs:WB (auth: Sd)
Chain Length:156
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:H0WTR0 Pfam ID:PF00416
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S Ribosomal protein eS19
Gene (Uniprot):RPS19
Chain IDs:XB (auth: Se)
Chain Length:145
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A2Y9E7Q1 Pfam ID:PF01090
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S20
Gene (Uniprot):RPS20
Chain IDs:YB (auth: Sf)
Chain Length:115
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SIZ2 Pfam ID:PF00338
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein eS21
Chain IDs:ZB (auth: Sg)
Chain Length:83
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A1Z5KTU7 Pfam ID:PF01249
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S15a
Gene (Uniprot):RPS15A
Chain IDs:AC (auth: Sh)
Chain Length:56
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TG89 Pfam ID:PF00410
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S23
Gene (Uniprot):RPS23
Chain IDs:BC (auth: Si)
Chain Length:143
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SZ47 Pfam ID:PF00164
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S24
Gene (Uniprot):RPS24
Chain IDs:CC (auth: Sj)
Chain Length:130
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A6J1UT65 Pfam ID:PF01282
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S25
Gene (Uniprot):RPS25
Chain IDs:DC (auth: Sk)
Chain Length:124
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A2U4BVW1 Pfam ID:PF03297
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L41
Gene (Uniprot):RPL41
Chain IDs:EC (auth: Sl)
Chain Length:25
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A087WNH4 Pfam ID:PF05162
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
6MZ WA A modified residue
7MG WA G modified residue
A2M WA A modified residue
AME ZB MET modified residue
AYA H ALA modified residue
GTP D G modified residue
HIC G HIS modified residue
HY3 BC PRO modified residue
M3L QA LYS modified residue
MA6 WA A modified residue
MLZ FA LYS modified residue
NMM XB ARG modified residue
OMC WA C modified residue
OMG E G modified residue
OMU WA U modified residue
PSU E U modified residue
SAC TA SER modified residue
Ligand Molecules
ZN
Primary Citation
Structure of the mammalian ribosome as it decodes the selenocysteine UGA codon.
Science 376 1338 1343 (2022)
PMID: 35709277 DOI: 10.1126/science.abg3875

Abstact

The elongation of eukaryotic selenoproteins relies on a poorly understood process of interpreting in-frame UGA stop codons as selenocysteine (Sec). We used cryo-electron microscopy to visualize Sec UGA recoding in mammals. A complex between the noncoding Sec-insertion sequence (SECIS), SECIS-binding protein 2 (SBP2), and 40S ribosomal subunit enables Sec-specific elongation factor eEFSec to deliver Sec. eEFSec and SBP2 do not interact directly but rather deploy their carboxyl-terminal domains to engage with the opposite ends of the SECIS. By using its Lys-rich and carboxyl-terminal segments, the ribosomal protein eS31 simultaneously interacts with Sec-specific transfer RNA (tRNASec) and SBP2, which further stabilizes the assembly. eEFSec is indiscriminate toward l-serine and facilitates its misincorporation at Sec UGA codons. Our results support a fundamentally distinct mechanism of Sec UGA recoding in eukaryotes from that in bacteria.

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Primary Citation of related structures
7ZJX