7ZJB image
Deposition Date 2022-04-10
Release Date 2023-04-19
Last Version Date 2024-11-06
Entry Detail
PDB ID:
7ZJB
Keywords:
Title:
Structural and functional characterization of the bacterial lytic polysaccharide Monooxygenase ScLPMO10D
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.37 Å
R-Value Free:
0.15
R-Value Work:
0.12
R-Value Observed:
0.13
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative secreted cellulose-binding protein
Gene (Uniprot):SCI11.23
Chain IDs:A (auth: B)
Chain Length:181
Number of Molecules:1
Biological Source:Streptomyces coelicolor A3(2)
Primary Citation
Structural and functional characterization of the catalytic domain of a cell-wall anchored bacterial lytic polysaccharide monooxygenase from Streptomyces coelicolor.
Sci Rep 13 5345 5345 (2023)
PMID: 37005446 DOI: 10.1038/s41598-023-32263-7

Abstact

Bacterial lytic polysaccharide monooxygenases (LPMOs) are known to oxidize the most abundant and recalcitrant polymers in Nature, namely cellulose and chitin. The genome of the model actinomycete Streptomyces coelicolor A3(2) encodes seven putative LPMOs, of which, upon phylogenetic analysis, four group with typical chitin-oxidizing LPMOs, two with typical cellulose-active LPMOs, and one which stands out by being part of a subclade of non-characterized enzymes. The latter enzyme, called ScLPMO10D, and most of the enzymes found in this subclade are unique, not only because of variation in the catalytic domain, but also as their C-terminus contains a cell wall sorting signal (CWSS), which flags the LPMO for covalent anchoring to the cell wall. Here, we have produced a truncated version of ScLPMO10D without the CWSS and determined its crystal structure, EPR spectrum, and various functional properties. While showing several structural and functional features typical for bacterial cellulose active LPMOs, ScLPMO10D is only active on chitin. Comparison with two known chitin-oxidizing LPMOs of different taxa revealed interesting functional differences related to copper reactivity. This study contributes to our understanding of the biological roles of LPMOs and provides a foundation for structural and functional comparison of phylogenetically distant LPMOs with similar substrate specificities.

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