7ZJ3 image
Entry Detail
PDB ID:
7ZJ3
Keywords:
Title:
Structure of TRIM2 RING domain in complex with UBE2D1~Ub conjugate
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-04-08
Release Date:
2022-11-30
Method Details:
Experimental Method:
Resolution:
2.53 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tripartite motif-containing protein 2
Chain IDs:A (auth: D), D (auth: G), G (auth: J), J (auth: A)
Chain Length:97
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Ubiquitin-conjugating enzyme E2 D1
Mutations:S22R C85K
Chain IDs:B (auth: E), E (auth: H), H (auth: K), L (auth: B)
Chain Length:150
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Polyubiquitin-C
Chain IDs:C (auth: F), F (auth: I), I (auth: L), K (auth: C)
Chain Length:80
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Divergent self-association properties of paralogous proteins TRIM2 and TRIM3 regulate their E3 ligase activity.
Nat Commun 13 7583 7583 (2022)
PMID: 36481767 DOI: 10.1038/s41467-022-35300-7

Abstact

Tripartite motif (TRIM) proteins constitute a large family of RING-type E3 ligases that share a conserved domain architecture. TRIM2 and TRIM3 are paralogous class VII TRIM members that are expressed mainly in the brain and regulate different neuronal functions. Here we present a detailed structure-function analysis of TRIM2 and TRIM3, which despite high sequence identity, exhibit markedly different self-association and activity profiles. We show that the isolated RING domain of human TRIM3 is monomeric and inactive, and that this lack of activity is due to a few placental mammal-specific amino acid changes adjacent to the core RING domain that prevent self-association but not E2 recognition. We demonstrate that the activity of human TRIM3 RING can be restored by substitution with the relevant region of human TRIM2 or by hetero-dimerization with human TRIM2, establishing that subtle amino acid changes can profoundly affect TRIM protein activity. Finally, we show that TRIM2 and TRIM3 interact in a cellular context via their filamin and coiled-coil domains, respectively.

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