ISDA

Deposition Date 2022-04-07

Release Date 2023-04-19

Last Version Date 2024-07-24

Entry Detail

PDB ID:

7ZI4

Keywords:

DNA BINDING PROTEIN

Title:

Cryo-EM structure of the human INO80 complex bound to a WT nucleosome

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.20 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RuvB-like 1
Gene (Uniprot):RUVBL1
Chain IDs:A, C, E
Chain Length:456
Number of Molecules:3
Biological Source:Homo sapiens

UniProt ID:Q9Y265 Pfam ID:PF06068, PF17856

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RuvB-like 2
Gene (Uniprot):RUVBL2
Chain IDs:B, D, F
Chain Length:463
Number of Molecules:3
Biological Source:Homo sapiens

UniProt ID:Q9Y230 Pfam ID:PF06068, PF17856

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Chromatin-remodeling ATPase INO80
Gene (Uniprot):INO80
Chain IDs:G
Chain Length:1556
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9ULG1 Pfam ID:PF13892, PF00176, PF00271

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Actin-related protein 5
Gene (Uniprot):ACTR5
Chain IDs:J (auth: H)
Chain Length:607
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9H9F9 Pfam ID:PF00022

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H3.1
Gene (Uniprot):H3C1, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3C10, H3C11, H3C12
Chain IDs:L (auth: I), P (auth: M)
Chain Length:136
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P68431 Pfam ID:PF00125

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1-B/E
Gene (Uniprot):H2AC4, H2AC8
Chain IDs:N (auth: K), Q (auth: O)
Chain Length:130
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P04908 Pfam ID:PF00125, PF16211

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2B type 1-J
Gene (Uniprot):H2BC11
Chain IDs:O (auth: L), R (auth: P)
Chain Length:126
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P06899 Pfam ID:PF00125

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:H (auth: N), M (auth: J)
Chain Length:103
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P62805 Pfam ID:PF15511

Protein Blast

Polymer Type:polypeptide(L)
Molecule:INO80 complex subunit C
Gene (Uniprot):INO80C
Chain IDs:K (auth: Q)
Chain Length:192
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q6PI98 Pfam ID:PF08265

Protein Blast

Polymer Type:polypeptide(L)
Molecule:INO80 complex subunit B
Gene (Uniprot):INO80B
Chain IDs:I (auth: R)
Chain Length:356
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9C086 Pfam ID:PF04795, PF04438

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (158-MER)
Chain IDs:S (auth: X)
Chain Length:158
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (158-MER)
Chain IDs:T (auth: Y)
Chain Length:158
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules

ADP

BEF

Primary Citation

Cryo-EM structure of the human INO80 complex bound to a WT nucleosome

Vance, N.R, Ayala, R, Willhoft, O, Tvardovskiy, A, McCormack, E.A, Bartke, T, Zhang, X, Wigley, D.B.Show

To Be Published ? ? ? (?)

Primary Citation of related structures