7ZHJ image
Entry Detail
PDB ID:
7ZHJ
EMDB ID:
Keywords:
Title:
Tail tip of siphophage T5 : tip proteins
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-04-06
Release Date:
2023-02-08
Method Details:
Experimental Method:
Resolution:
3.53 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tail tube protein
Chain IDs:F, M (auth: E), N (auth: C), U (auth: D), V (auth: A), W (auth: B)
Chain Length:204
Number of Molecules:6
Biological Source:Escherichia phage T5
Polymer Type:polypeptide(L)
Description:Minor tail protein
Chain IDs:B (auth: I), H, Q (auth: G)
Chain Length:1219
Number of Molecules:3
Biological Source:Escherichia phage T5
Polymer Type:polypeptide(L)
Description:L-shaped tail fiber protein p132
Chain IDs:A (auth: R), D (auth: Q), E (auth: S), G (auth: N), K (auth: M), L (auth: O), O (auth: J), P (auth: L), S (auth: U), T (auth: K), X (auth: P), Y (auth: T)
Chain Length:140
Number of Molecules:12
Biological Source:Escherichia phage T5
Polymer Type:polypeptide(L)
Description:Distal tail protein
Chain IDs:C (auth: a), I (auth: X), J (auth: Y), R (auth: W), CA (auth: V), DA (auth: Z)
Chain Length:204
Number of Molecules:6
Biological Source:Escherichia phage T5
Polymer Type:polypeptide(L)
Description:Probable baseplate hub protein
Chain IDs:EA (auth: b), FA (auth: d), GA (auth: c)
Chain Length:949
Number of Molecules:3
Biological Source:Escherichia phage T5
Polymer Type:polypeptide(L)
Description:Pore-forming tail tip protein pb2
Chain IDs:Z (auth: f), AA (auth: g), BA (auth: e)
Chain Length:464
Number of Molecules:3
Biological Source:Escherichia phage T5
Ligand Molecules
Primary Citation
Structural basis of bacteriophage T5 infection trigger and E. coli cell wall perforation.
Sci Adv 9 eade9674 eade9674 (2023)
PMID: 36961893 DOI: 10.1126/sciadv.ade9674

Abstact

Most bacteriophages present a tail allowing host recognition, cell wall perforation, and viral DNA channeling from the capsid to the infected bacterium cytoplasm. The majority of tailed phages bear a long flexible tail (Siphoviridae) at the tip of which receptor binding proteins (RBPs) specifically interact with their host, triggering infection. In siphophage T5, the unique RBP is located at the extremity of a central fiber. We present the structures of T5 tail tip, determined by cryo-electron microscopy before and after interaction with its E. coli receptor, FhuA, reconstituted into nanodisc. These structures bring out the important conformational changes undergone by T5 tail tip upon infection, which include bending of T5 central fiber on the side of the tail tip, tail anchoring to the membrane, tail tube opening, and formation of a transmembrane channel. The data allow to detail the first steps of an otherwise undescribed infection mechanism.

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Protein

Chemical

Disease

Primary Citation of related structures