7ZCK image
Deposition Date 2022-03-28
Release Date 2022-05-04
Last Version Date 2024-02-07
Entry Detail
PDB ID:
7ZCK
Title:
Room temperature crystal structure of PhnD from Synechococcus MITS9220 in complex with phosphate
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phosphonate ABC type transporter/ substrate binding component
Gene (Uniprot):SynMITS9220_01173
Chain IDs:A (auth: C)
Chain Length:275
Number of Molecules:1
Biological Source:Synechococcus sp. MIT S9220
Primary Citation
Protein-to-structure pipeline for ambient-temperature in situ crystallography at VMXi.
Iucrj 10 420 429 (2023)
PMID: 37199504 DOI: 10.1107/S2052252523003810

Abstact

The utility of X-ray crystal structures determined under ambient-temperature conditions is becoming increasingly recognized. Such experiments can allow protein dynamics to be characterized and are particularly well suited to challenging protein targets that may form fragile crystals that are difficult to cryo-cool. Room-temperature data collection also enables time-resolved experiments. In contrast to the high-throughput highly automated pipelines for determination of structures at cryogenic temperatures widely available at synchrotron beamlines, room-temperature methodology is less mature. Here, the current status of the fully automated ambient-temperature beamline VMXi at Diamond Light Source is described, and a highly efficient pipeline from protein sample to final multi-crystal data analysis and structure determination is shown. The capability of the pipeline is illustrated using a range of user case studies representing different challenges, and from high and lower symmetry space groups and varied crystal sizes. It is also demonstrated that very rapid structure determination from crystals in situ within crystallization plates is now routine with minimal user intervention.

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Primary Citation of related structures