7Z8F image
Deposition Date 2022-03-17
Release Date 2022-07-27
Last Version Date 2024-07-24
Entry Detail
PDB ID:
7Z8F
Title:
Composite structure of dynein-dynactin-BICDR on microtubules
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
Sus scrofa (Taxon ID: 9823)
Host Organism:
Method Details:
Experimental Method:
Resolution:
20.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ARP1 actin related protein 1 homolog A
Gene (Uniprot):ACTR1A
Chain IDs:A, B, C, D, E, F, G, I
Chain Length:376
Number of Molecules:8
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Actin, cytoplasmic 1
Gene (Uniprot):ACTB
Chain IDs:H
Chain Length:638
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Arp11
Gene (Uniprot):ACTR10
Chain IDs:J
Chain Length:492
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Capping protein (Actin filament) muscle Z-line, alpha 1
Gene (Uniprot):CAPZA1
Chain IDs:K
Chain Length:286
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:F-actin capping protein beta subunit
Chain IDs:L
Chain Length:272
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 2
Gene (Uniprot):DCTN2
Chain IDs:M, N, P, Q
Chain Length:4646
Number of Molecules:4
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 3
Gene (Uniprot):DCTN3
Chain IDs:O, R
Chain Length:638
Number of Molecules:2
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 1
Chain IDs:S, T
Chain Length:96
Number of Molecules:2
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynactin 6
Gene (Uniprot):DCTN6
Chain IDs:U
Chain Length:190
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 5
Gene (Uniprot):DCTN5
Chain IDs:V
Chain Length:182
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:BICD family-like cargo adapter 1
Gene (Uniprot):Bicdl1
Chain IDs:W, X, PA (auth: w), QA (auth: x)
Chain Length:577
Number of Molecules:4
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 4
Gene (Uniprot):DCTN4
Chain IDs:Y
Chain Length:467
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytoplasmic dynein 1 heavy chain 1
Gene (Uniprot):DYNC1H1
Mutagens:R1567E, K1610E
Chain IDs:Z (auth: e), AA (auth: f), HA (auth: m), IA (auth: n)
Chain Length:376
Number of Molecules:4
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytoplasmic dynein 1 intermediate chain 2
Gene (Uniprot):DYNC1I2
Chain IDs:BA (auth: g), CA (auth: h), JA (auth: o), KA (auth: p)
Chain Length:638
Number of Molecules:4
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytoplasmic dynein 1 light intermediate chain 2
Gene (Uniprot):DYNC1LI2
Chain IDs:DA (auth: i), EA (auth: j), LA (auth: q), MA (auth: r)
Chain Length:492
Number of Molecules:4
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynein light chain roadblock-type 1
Gene (Uniprot):DYNLRB1
Chain IDs:FA (auth: k), GA (auth: l), NA (auth: s), OA (auth: t)
Chain Length:286
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Structure of dynein-dynactin on microtubules shows tandem adaptor binding.
Nature 610 212 216 (2022)
PMID: 36071160 DOI: 10.1038/s41586-022-05186-y

Abstact

Cytoplasmic dynein is a microtubule motor that is activated by its cofactor dynactin and a coiled-coil cargo adaptor1-3. Up to two dynein dimers can be recruited per dynactin, and interactions between them affect their combined motile behaviour4-6. Different coiled-coil adaptors are linked to different cargos7,8, and some share motifs known to contact sites on dynein and dynactin4,9-13. There is limited structural information on how the resulting complex interacts with microtubules and how adaptors are recruited. Here we develop a cryo-electron microscopy processing pipeline to solve the high-resolution structure of dynein-dynactin and the adaptor BICDR1 bound to microtubules. This reveals the asymmetric interactions between neighbouring dynein motor domains and how they relate to motile behaviour. We found that two adaptors occupy the complex. Both adaptors make similar interactions with the dyneins but diverge in their contacts with each other and dynactin. Our structure has implications for the stability and stoichiometry of motor recruitment by cargos.

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