7Z7H image
Deposition Date 2022-03-15
Release Date 2022-06-29
Last Version Date 2023-03-15
Entry Detail
PDB ID:
7Z7H
Keywords:
Title:
Structure of P. luminescens TccC3-F-actin complex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
FILAMENT
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Actin, alpha skeletal muscle
Gene (Uniprot):ACTA1
Chain IDs:A (auth: D), C (auth: B), D (auth: E), E (auth: C), F (auth: A)
Chain Length:377
Number of Molecules:5
Biological Source:Oryctolagus cuniculus
Polymer Type:polypeptide(L)
Molecule:Maltose/maltodextrin-binding periplasmic protein,TccC3
Gene (Uniprot):malE, TccC3
Chain IDs:B (auth: F)
Chain Length:578
Number of Molecules:1
Biological Source:Photorhabdus luminescens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
HIC A HIS modified residue
Primary Citation
Mechanism of threonine ADP-ribosylation of F-actin by a Tc toxin.
Nat Commun 13 4202 4202 (2022)
PMID: 35858890 DOI: 10.1038/s41467-022-31836-w

Abstact

Tc toxins deliver toxic enzymes into host cells by a unique injection mechanism. One of these enzymes is the actin ADP-ribosyltransferase TccC3, whose activity leads to the clustering of the cellular cytoskeleton and ultimately cell death. Here, we show in atomic detail how TccC3 modifies actin. We find that the ADP-ribosyltransferase does not bind to G-actin but interacts with two consecutive actin subunits of F-actin. The binding of TccC3 to F-actin occurs via an induced-fit mechanism that facilitates access of NAD+ to the nucleotide binding pocket. The following nucleophilic substitution reaction results in the transfer of ADP-ribose to threonine-148 of F-actin. We demonstrate that this site-specific modification of F-actin prevents its interaction with depolymerization factors, such as cofilin, which impairs actin network turnover and leads to steady actin polymerization. Our findings reveal in atomic detail a mechanism of action of a bacterial toxin through specific targeting and modification of F-actin.

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