7Z3N image
Entry Detail
PDB ID:
7Z3N
EMDB ID:
Keywords:
Title:
Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1 conformation
Biological Source:
PDB Version:
Deposition Date:
2022-03-02
Release Date:
2023-04-12
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Description:26S rRNA
Chain IDs:A (auth: 1)
Chain Length:3337
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polyribonucleotide
Description:18S rRNA
Chain IDs:B (auth: 2)
Chain Length:1796
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polyribonucleotide
Description:5S rRNA
Chain IDs:C (auth: 3)
Chain Length:120
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polyribonucleotide
Description:5.8S rRNA
Chain IDs:D (auth: 4)
Chain Length:156
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:Putative guanine nucleotide-binding protein
Chain IDs:E (auth: A)
Chain Length:316
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:HABP4_PAI-RBP1 domain-containing protein
Chain IDs:F (auth: B)
Chain Length:302
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:Putative ribosome associated protein
Chain IDs:G (auth: C)
Chain Length:446
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:Putative heat shock protein
Chain IDs:H (auth: D)
Chain Length:578
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L2-like protein
Chain IDs:I (auth: LA)
Chain Length:149
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L3-like protein
Chain IDs:J (auth: LB)
Chain Length:392
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L4-like protein
Chain IDs:K (auth: LC)
Chain Length:365
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein l5-like protein
Chain IDs:L (auth: LD)
Chain Length:304
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L6
Chain IDs:M (auth: LE)
Chain Length:200
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein l7-like protein
Chain IDs:N (auth: LF)
Chain Length:249
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L8
Chain IDs:O (auth: LG)
Chain Length:262
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:uL6
Chain IDs:P (auth: LH)
Chain Length:126
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L10-like protein
Chain IDs:Q (auth: LI)
Chain Length:219
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:Putative ribosomal protein
Chain IDs:R (auth: LJ)
Chain Length:173
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L12-like protein
Chain IDs:S (auth: LK)
Chain Length:165
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L13
Chain IDs:T (auth: LL)
Chain Length:213
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L14-like protein
Chain IDs:U (auth: LM)
Chain Length:128
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:Ribosomal protein L15
Chain IDs:V (auth: LN)
Chain Length:25
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L16-like protein
Chain IDs:W (auth: LO)
Chain Length:106
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein l17-like protein
Chain IDs:X (auth: LP)
Chain Length:92
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:Ribosomal protein L18-like protein
Chain IDs:Y (auth: LQ)
Chain Length:213
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:Ribosomal protein L19
Chain IDs:Z (auth: LR)
Chain Length:192
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L20
Chain IDs:AA (auth: LS)
Chain Length:174
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein l21-like protein
Chain IDs:BA (auth: LT)
Chain Length:160
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L22-like protein
Chain IDs:CA (auth: LU)
Chain Length:127
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein l23-like protein
Chain IDs:DA (auth: LV)
Chain Length:139
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:eL24
Chain IDs:EA (auth: LW)
Chain Length:161
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L25-like protein
Chain IDs:FA (auth: LX)
Chain Length:156
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L26-like protein
Chain IDs:GA (auth: LY)
Chain Length:138
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L27
Chain IDs:HA (auth: LZ)
Chain Length:135
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L28-like protein
Chain IDs:IA (auth: La)
Chain Length:149
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L29
Chain IDs:JA (auth: Lb)
Chain Length:392
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein l30-like protein
Chain IDs:KA (auth: Lc)
Chain Length:365
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:Putative 60S ribosomal protein
Chain IDs:LA (auth: Ld)
Chain Length:304
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L32-like protein
Chain IDs:MA (auth: Le)
Chain Length:200
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein l33-like protein
Chain IDs:NA (auth: Lf)
Chain Length:249
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:Ribosomal protein l34-like protein
Chain IDs:OA (auth: Lg)
Chain Length:262
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:Dolichyl-diphosphooligosaccharide--protein glycotransferase
Chain IDs:PA (auth: Lh)
Chain Length:126
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L36
Chain IDs:QA (auth: Li)
Chain Length:219
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:Ribosomal protein L37
Chain IDs:RA (auth: Lj)
Chain Length:173
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:eL38
Chain IDs:SA (auth: Lk)
Chain Length:165
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:Ribosomal protein eL39
Chain IDs:TA (auth: Ll)
Chain Length:213
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:Putative ribosomal protein
Chain IDs:UA (auth: Lm)
Chain Length:128
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L41-A
Chain IDs:VA (auth: Ln), ZA (auth: Lr)
Chain Length:25
Number of Molecules:2
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L44-like protein
Chain IDs:WA (auth: Lo)
Chain Length:106
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S ribosomal protein L43-like protein
Chain IDs:XA (auth: Lp)
Chain Length:92
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:Putative 60S ribosomal protein
Chain IDs:YA (auth: Lq)
Chain Length:213
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:60S acidic ribosomal protein P0
Chain IDs:AB (auth: Ls)
Chain Length:174
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:Nascent chain
Chain IDs:BB (auth: NC)
Chain Length:27
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S0
Chain IDs:CB (auth: SA)
Chain Length:119
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S1
Chain IDs:DB (auth: SB)
Chain Length:82
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S2-like protein
Chain IDs:EB (auth: SC)
Chain Length:263
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S3-like protein
Chain IDs:FB (auth: SD)
Chain Length:254
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S4
Chain IDs:GB (auth: SE)
Chain Length:62
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein s5-like protein
Chain IDs:HB (auth: SF)
Chain Length:212
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S6
Chain IDs:IB (auth: SG)
Chain Length:239
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S7
Chain IDs:JB (auth: SH)
Chain Length:203
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S8
Chain IDs:KB (auth: SI)
Chain Length:202
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein s9-like protein
Chain IDs:LB (auth: SJ)
Chain Length:190
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein s10-like protein
Chain IDs:MB (auth: SK)
Chain Length:159
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S11-like protein
Chain IDs:NB (auth: SL)
Chain Length:161
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S12
Chain IDs:OB (auth: SM)
Chain Length:144
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S13-like protein
Chain IDs:PB (auth: SN)
Chain Length:151
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S14-like protein
Chain IDs:QB (auth: SO)
Chain Length:150
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein s15-like protein
Chain IDs:RB (auth: SP)
Chain Length:153
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S16-like protein
Chain IDs:SB (auth: SQ)
Chain Length:143
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S17-like protein
Chain IDs:TB (auth: SR)
Chain Length:143
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:Putative ribosomal protein
Chain IDs:UB (auth: SS)
Chain Length:156
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S19-like protein
Chain IDs:VB (auth: ST)
Chain Length:153
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S20-like protein
Chain IDs:WB (auth: SU)
Chain Length:116
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S21-like protein
Chain IDs:XB (auth: SV)
Chain Length:98
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S22-like protein
Chain IDs:YB (auth: SW)
Chain Length:130
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein s23-like protein
Chain IDs:ZB (auth: SX)
Chain Length:145
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S24
Chain IDs:AC (auth: SY)
Chain Length:136
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S25
Chain IDs:BC (auth: SZ)
Chain Length:99
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S26
Chain IDs:CC (auth: Sa)
Chain Length:119
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:Ribosomal protein s27-like protein
Chain IDs:DC (auth: Sb)
Chain Length:82
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S28-like protein
Chain IDs:EC (auth: Sc)
Chain Length:263
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:Ribosomal protein uS14
Chain IDs:FC (auth: Sd)
Chain Length:254
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S30
Chain IDs:GC (auth: Se)
Chain Length:62
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S27a-like protein
Chain IDs:HC (auth: Sf)
Chain Length:212
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SAC W SER modified residue
Primary Citation
Structural inventory of cotranslational protein folding by the eukaryotic RAC complex.
Nat.Struct.Mol.Biol. 30 670 677 (2023)
PMID: 37081320 DOI: 10.1038/s41594-023-00973-1

Abstact

The challenge of nascent chain folding at the ribosome is met by the conserved ribosome-associated complex (RAC), which forms a chaperone triad with the Hsp70 protein Ssb in fungi, and consists of the non-canonical Hsp70 Ssz1 and the J domain protein Zuotin (Zuo1). Here we determine cryo-EM structures of Chaetomium thermophilum RAC bound to 80S ribosomes. RAC adopts two distinct conformations accommodating continuous ribosomal rotation by a flexible lever arm. It is held together by a tight interaction between the Ssz1 substrate-binding domain and the Zuo1 N terminus, and additional contacts between the Ssz1 nucleotide-binding domain and Zuo1 J- and Zuo1 homology domains, which form a rigid unit. The Zuo1 HPD motif conserved in J-proteins is masked in a non-canonical interaction by the Ssz1 nucleotide-binding domain, and allows the positioning of Ssb for activation by Zuo1. Overall, we provide the basis for understanding how RAC cooperates with Ssb in a dynamic nascent chain interaction and protein folding.

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Primary Citation of related structures