7YXD image
Entry Detail
PDB ID:
7YXD
Keywords:
Title:
Crystal structure of WT AncGR2-LBD bound to dexamethasone and SHP coregulator fragment
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-02-15
Release Date:
2022-12-07
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 31
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ancestral Glucocorticoid Receptor2
Chain IDs:A, C (auth: D), E (auth: H), G (auth: L)
Chain Length:248
Number of Molecules:4
Biological Source:unidentified
Polymer Type:polypeptide(L)
Description:SHP NR Box 1 Peptide
Chain IDs:B (auth: C), D (auth: F), F (auth: J), H (auth: N)
Chain Length:12
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation

Abstact

The glucocorticoid receptor (GR) is a ubiquitously expressed transcription factor that controls metabolic and homeostatic processes essential for life. Although numerous crystal structures of the GR ligand-binding domain (GR-LBD) have been reported, the functional oligomeric state of the full-length receptor, which is essential for its transcriptional activity, remains disputed. Here we present five new crystal structures of agonist-bound GR-LBD, along with a thorough analysis of previous structural work. We identify four distinct homodimerization interfaces on the GR-LBD surface, which can associate into 20 topologically different homodimers. Biologically relevant homodimers were identified by studying a battery of GR point mutants including crosslinking assays in solution, quantitative fluorescence microscopy in living cells, and transcriptomic analyses. Our results highlight the relevance of non-canonical dimerization modes for GR, especially of contacts made by loop L1-3 residues such as Tyr545. Our work illustrates the unique flexibility of GR's LBD and suggests different dimeric conformations within cells. In addition, we unveil pathophysiologically relevant quaternary assemblies of the receptor with important implications for glucocorticoid action and drug design.

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