7YWX image
Deposition Date 2022-02-14
Release Date 2022-05-18
Last Version Date 2024-07-17
Entry Detail
PDB ID:
7YWX
Keywords:
Title:
Structure of the human CCAN CENP-A alpha-satellite complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
12.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Histone H3-like centromeric protein A
Gene (Uniprot):CENPA
Chain IDs:R (auth: A), V (auth: E)
Chain Length:544
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:S (auth: B), W (auth: F)
Chain Length:544
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1-C
Gene (Uniprot):H2AC6
Chain IDs:T (auth: C), X (auth: G)
Chain Length:130
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Histone H2B type 1-C/E/F/G/I
Gene (Uniprot):H2BC4, H2BC6, H2BC7, H2BC8, H2BC10
Chain IDs:U (auth: D), Y (auth: V)
Chain Length:126
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Centromere protein H
Gene (Uniprot):CENPH
Chain IDs:A (auth: H)
Chain Length:247
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Centromere protein I
Gene (Uniprot):CENPI
Chain IDs:B (auth: I)
Chain Length:171
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (171-MER)
Chain IDs:Q (auth: J)
Chain Length:171
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Centromere protein K
Gene (Uniprot):CENPK
Chain IDs:C (auth: K)
Chain Length:269
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Centromere protein L
Gene (Uniprot):CENPL
Chain IDs:D (auth: L)
Chain Length:344
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Centromere protein M
Gene (Uniprot):CENPM
Chain IDs:E (auth: M)
Chain Length:180
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Centromere protein N
Gene (Uniprot):CENPN
Chain IDs:F (auth: N)
Chain Length:339
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Centromere protein O
Gene (Uniprot):CENPO
Chain IDs:G (auth: O)
Chain Length:300
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Centromere protein P
Gene (Uniprot):CENPP
Chain IDs:J (auth: P)
Chain Length:288
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Centromere protein Q
Gene (Uniprot):CENPQ
Chain IDs:H (auth: Q)
Chain Length:268
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Centromere protein R
Gene (Uniprot):ITGB3BP
Chain IDs:K (auth: R)
Chain Length:177
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Centromere protein S
Gene (Uniprot):CENPS
Chain IDs:N (auth: S)
Chain Length:138
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Centromere protein T
Gene (Uniprot):CENPT
Chain IDs:L (auth: T)
Chain Length:561
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Centromere protein U
Gene (Uniprot):CENPU
Chain IDs:I (auth: U)
Chain Length:418
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Centromere protein W
Gene (Uniprot):CENPW
Chain IDs:M (auth: W)
Chain Length:88
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Centromere protein X
Gene (Uniprot):CENPX
Chain IDs:O (auth: X)
Chain Length:81
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Centromere protein C
Gene (Uniprot):CENPC
Chain IDs:Z (auth: a), AA (auth: b)
Chain Length:544
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (171-MER)
Chain IDs:P (auth: i)
Chain Length:171
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure of the human inner kinetochore bound to a centromeric CENP-A nucleosome.
Science 376 844 852 (2022)
PMID: 35420891 DOI: 10.1126/science.abn3810

Abstact

Kinetochores assemble onto specialized centromeric CENP-A (centromere protein A) nucleosomes (CENP-ANuc) to mediate attachments between chromosomes and the mitotic spindle. We describe cryo-electron microscopy structures of the human inner kinetochore constitutive centromere associated network (CCAN) complex bound to CENP-ANuc reconstituted onto α-satellite DNA. CCAN forms edge-on contacts with CENP-ANuc, and a linker DNA segment of the α-satellite repeat emerges from the fully wrapped end of the nucleosome to thread through the central CENP-LN channel that tightly grips the DNA. The CENP-TWSX histone-fold module further augments DNA binding and partially wraps the linker DNA in a manner reminiscent of canonical nucleosomes. Our study suggests that the topological entrapment of the linker DNA by CCAN provides a robust mechanism by which kinetochores withstand both pushing and pulling forces exerted by the mitotic spindle.

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Primary Citation of related structures