ISDA: 7YWS

Deposition Date 2022-02-14

Release Date 2023-01-18

Last Version Date 2024-01-31

Entry Detail

PDB ID:

7YWS

Keywords:

HYDROLASE

Title:

Modified oligopeptidase B from S. proteomaculans in intermediate conformation with 3 spermine molecules at 1.7 A resolution

Biological Source:

Source Organism:

Serratia proteamaculans (Taxon ID: 28151)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.70 Å

R-Value Free:

0.21

R-Value Work:

0.18

R-Value Observed:

0.18

Space Group:

P 21 21 21

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Oligopeptidase B
Gene (Uniprot):opdB
Chain IDs:A
Chain Length:677
Number of Molecules:1
Biological Source:Serratia proteamaculans

UniProt ID:B3VI58 Pfam ID:PF02897, PF00326 EC:3.4.21.83

Ligand Molecules

SPM

Primary Citation

Elucidation of the Conformational Transition of Oligopeptidase B by an Integrative Approach Based on the Combination of X-ray, SAXS, and Essential Dynamics Sampling Simulation

Britikov, V.V, Timofeev, V.I, Petrenko, D.E, Britikova, E.V, Nikolaeva, A.Y, Vlaskina, A.V, Boyko, K.M, Mikhailova, A.G, Rakitina, T.V.Show

Crystals 12 ? ? (2022)

DOI: 10.3390/cryst12050712

Primary Citation of related structures

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