7YWD image
Deposition Date 2022-02-13
Release Date 2022-06-08
Last Version Date 2024-11-13
Entry Detail
PDB ID:
7YWD
Title:
Human GDAP1 core domain, trigonal crystal form
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.27
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ganglioside-induced differentiation-associated protein 1
Gene (Uniprot):GDAP1
Chain IDs:A, B, C, D
Chain Length:272
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural insights into Charcot-Marie-Tooth disease-linked mutations in human GDAP1.
Febs Open Bio 12 1306 1324 (2022)
PMID: 35509130 DOI: 10.1002/2211-5463.13422

Abstact

Charcot-Marie-Tooth disease (CMT) is the most common inherited peripheral polyneuropathy in humans, and its different subtypes are linked to mutations in dozens of different genes. Mutations in ganglioside-induced differentiation-associated protein 1 (GDAP1) cause two types of CMT, demyelinating CMT4A and axonal CMT2K. The GDAP1-linked CMT genotypes are mainly missense point mutations. Despite clinical profiling and in vivo studies on the mutations, the etiology of GDAP1-linked CMT is poorly understood. Here, we describe the biochemical and structural properties of the Finnish founding CMT2K mutation H123R and CMT2K-linked R120W, both of which are autosomal dominant mutations. The disease variant proteins retain close to normal structure and solution behavior, but both present a significant decrease in thermal stability. Using GDAP1 variant crystal structures, we identify a side-chain interaction network between helices ⍺3, ⍺6, and ⍺7, which is affected by CMT mutations, as well as a hinge in the long helix ⍺6, which is linked to structural flexibility. Structural analysis of GDAP1 indicates that CMT may arise from disruption of specific intra- and intermolecular interaction networks, leading to alterations in GDAP1 structure and stability, and, eventually, insufficient motor and sensory neuron function.

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Primary Citation of related structures