ISDA

Deposition Date 2022-08-17

Release Date 2023-09-06

Last Version Date 2024-10-30

Entry Detail

PDB ID:

7YUB

Keywords:

MEMBRANE PROTEIN

Title:

S1P-bound human SPNS2

Biological Source:

Source Organism:

synthetic construct (Taxon ID: 32630)
Lama glama (Taxon ID: 9844)
Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.22 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:NbFab-H-chain
Chain IDs:A (auth: H)
Chain Length:246
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polypeptide(L)
Molecule:NbFab-L-chain
Chain IDs:B (auth: L)
Chain Length:216
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polypeptide(L)
Molecule:Tc-Nb8
Chain IDs:C (auth: N)
Chain Length:128
Number of Molecules:1
Biological Source:Lama glama

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Sphingosine-1-phosphate transporter SPNS2
Gene (Uniprot):SPNS2
Chain IDs:D (auth: R)
Chain Length:549
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q8IVW8 Pfam ID:PF07690

Ligand Molecules

S1P

Primary Citation

Structural basis of Sphingosine-1-phosphate transport via human SPNS2.

Duan, Y, Leong, N.C.P, Zhao, J, Zhang, Y, Nguyen, D.T, Ha, H.T.T, Wang, N, Xia, R, Xu, Z, Ma, Z, Qian, Y, Yin, H, Zhu, X, Zhang, A, Guo, C, Xia, Y, Nguyen, L.N, He, Y.Show

Cell Res. 34 177 180 (2024)

PMID: 38123825 DOI: 10.1038/s41422-023-00913-0

Primary Citation of related structures